Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0920
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 32 0.46
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 31 0.80
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 31 1.4
04_03_0343 + 14683782-14684222 29 4.3
04_03_1016 + 21742060-21742219,21742301-21742596,21742705-217427... 29 5.7
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 29 5.7
12_02_0189 + 15165485-15168694 28 7.5
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 7.5
07_03_0942 + 22773678-22773777,22773869-22774022,22774194-227742... 28 7.5
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 28 7.5
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 7.5
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331... 28 7.5
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 28 9.9
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 28 9.9
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 291 FPHLRL-FQSREDGNWQPLAAVTFVSGTRTVIRKSKVQL 178
F HL+L +S +GNW+ + + F+ G + V K K+Q+
Sbjct: 138 FAHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 312 PKRVLRWIATQARMGSRCGEPCLSNGRARRSPSQKKKKDVRCLQHRRINICW 467
PK L+ + + C E C RA KK++D+ L+ R NICW
Sbjct: 716 PKAPLKVLGEYTQFNFMCCEKCQLL-RASLHEGLKKREDIAFLRRIRYNICW 766
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -3
Query: 453 SSGVEGSGHPSSSSAKDFVELVHLRGKALRIGIPSLPASQSIGGHALGSNIRFHFPHLRL 274
++G EG SA + +L LRG R G SL A G HAL ++PH+ L
Sbjct: 31 ANGGEGDPVVDVYSAAAYGDLERLRGFVERDGGASLAAPDGNGYHALQWATLNNYPHVAL 90
Query: 273 FQSREDGN 250
+ G+
Sbjct: 91 YIIEHGGD 98
>04_03_0343 + 14683782-14684222
Length = 146
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 341 AGKDGIPMRRALPLKWTSSTKSFAEEEEGCPLPSTPEDQHLLDAEMAEVL 490
AG D + + R +P T S + GCP P+TP LL +L
Sbjct: 57 AGLDSLQLPRVVP---TRSDAIMLDPHVGCPDPATPAPDPLLSVRRVTIL 103
>04_03_1016 +
21742060-21742219,21742301-21742596,21742705-21742758,
21743480-21743503
Length = 177
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 330 IGGHALGS-NIRFHFPHLRLFQSREDGNWQPLAAVTFVSG 214
+ G AL S N + F H ++ +G+W+P+A T +SG
Sbjct: 52 LNGKALQSGNQWYFFSHATQTRTSPNGHWKPIADETVISG 91
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 274 QAKMWEVESDIGSQSVSSDGLRRRQGWDPDAESLASQMDELD 399
Q + SD+ + S +S +QG D DA +S+M LD
Sbjct: 966 QGQRASTPSDVATSSTNSQNQETKQGGDSDAGLASSEMVNLD 1007
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 316 SVSSDGLRRRQGWDPD 363
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 593 TCAISDICHVGLQDNXYLHK 652
TCA +++C G++D+ YL K
Sbjct: 387 TCACAELCAFGIEDSSYLEK 406
>07_03_0942 +
22773678-22773777,22773869-22774022,22774194-22774265,
22774353-22774424,22774599-22774667,22774754-22774926,
22775457-22775629,22775654-22775827,22775987-22776113,
22776184-22776252,22776432-22776621,22776789-22776921,
22777091-22777441
Length = 618
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 424 FFFFCEGLRRARPFERQGSPHRDPILACVAIHRRTRFGIQ 305
FFF C R P ++ S R+P+ + H+ T +Q
Sbjct: 192 FFFVCFNKREKNPQKKDCSSTRNPVFEECSTHKATNSAVQ 231
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 332 PSEDTLWDPISDSTSHIFACFNHAKMEIG 246
P +D L+DP S+S +F+C + ++G
Sbjct: 169 PQKDVLYDPTKSSSSGVFSCNSPTCTQLG 197
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 360 RCGEPCLSNGRARRSPSQKKKKDVRCLQHRRINIC-WMPKW 479
R + CL NG R+ ++K + + R Q R++ W P+W
Sbjct: 767 RPDQRCLENGEYERANAEKLRLEQRQRQARKMQESGWKPRW 807
>01_06_0898 -
32832665-32832724,32832761-32832815,32832957-32833135,
32833218-32833328,32833600-32833647,32833810-32833949,
32834402-32834539,32834660-32834804,32834936-32835002,
32835226-32835329,32835444-32835647
Length = 416
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +1
Query: 208 SCTANKGHGGQWLPISIFA*LKQAKMWEVESDIGSQS 318
SC + + G+W P +A +A W D+ S
Sbjct: 95 SCASTSSNSGRWAPSPAYAAFSEADSWSSSKDLRRNS 131
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 593 TCAISDICHVGLQDNXYLHK 652
TCA +++C G++D+ YL K
Sbjct: 387 TCACAELCAFGIEDSSYLDK 406
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 326 PMDCDAGKDGIPMRRALPLKW 388
P+ GKDG P+ R PL W
Sbjct: 457 PLQIQVGKDGSPLPRLKPLHW 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,898,328
Number of Sequences: 37544
Number of extensions: 515275
Number of successful extensions: 1463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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