Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0920
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_36578| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.4  
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.4  
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.4  
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)                     29   4.4  
SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)                    29   4.4  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                29   4.4  
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.4  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                29   4.4  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  
SB_10147| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)                28   7.6  
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         28   7.6  
SB_19267| Best HMM Match : TIL (HMM E-Value=2.5)                       28   7.6  

>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 626 LQDNXYLHKGHRPPLPFVQRMFCINFPNPH*EQVXIWTHLLCCVALLAS 772
           L+DN +L   HRPPL   +  F   F   H E   IWTH +  +A +A+
Sbjct: 230 LRDNEFLEDSHRPPLNSFKSCFKSMF-KIHTETGNIWTHFIGFLAFIAA 277



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 675 SFSACFASIFRIHTE 719
           SF +CF S+F+IHTE
Sbjct: 246 SFKSCFKSMFKIHTE 260


>SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 333 SIGGHALGSNIRFHFPHLRLFQSREDGNWQPLAAVTFVSG 214
           S  G    +   + FPHL   + R DGN +P++ + +  G
Sbjct: 297 SYNGDNTKNPFNYQFPHLSSVEVRVDGNERPISGLKYTDG 336


>SB_36578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 338 DAGKDGIPMRRALPLKWTSSTKSFAEEEEGCPLP 439
           D   + +  R+  PL +  STK F +++ GCP+P
Sbjct: 19  DISCNKLEARQPSPLFFNISTKLFVKQDTGCPMP 52


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 534 IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 566


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 293 WNLILDPKACPPMDCDAGKDGIP 361
           WN +L+P    P DCD   +G+P
Sbjct: 749 WNDVLNPLLAEPPDCDPTYEGLP 771


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 13  IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 45


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 13  IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 45


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 13  IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 45


>SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)
          Length = 249

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 214 IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 246


>SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)
          Length = 242

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 641 YLHKGHRPPLPFVQRMFCINFPNPH*EQVXIWTHLLCCVALLASRS 778
           Y+H  +R P   V++     F  PH E V IW+H +     L   S
Sbjct: 52  YIHTRYRRPCLSVEQCIESMF-QPHNETVNIWSHFIAAFVFLIHNS 96


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 324 GHALGSNIRFHFPHLRLFQSREDGNWQPLAAVTFVSG 214
           GH   + I F  PHL   + + DGN  P++ +  + G
Sbjct: 214 GHYKKNPINFQMPHLNSIEVKVDGNKTPISNLKNIDG 250


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 182 IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 214


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 851 IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 883


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 305  LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
            ++ +A P +D D   D +P+ RAL ++W   T +F
Sbjct: 1129 IEKRAAPTLDLDL--DELPVERALGVRWNVETDTF 1161


>SB_10147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 396 RRSPSQKKKKDVRCLQH---RRINIC 464
           RR P+  K+KD  C+QH   R+  IC
Sbjct: 6   RRKPASNKRKDAECMQHFLNRQCMIC 31


>SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)
          Length = 353

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 281 RCGKWNLILDPKACPP--MDCDAGKDGIPMRRALPLKWTSSTKSFAEEEEGCPLP 439
           R   WN I + +      + C     GI + R    K T +  S  ++  GCPLP
Sbjct: 180 RMPDWNKISEKEIVEKFSVSCPTSSAGIALPRKRQGKSTGARDSCGDKSSGCPLP 234


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 305 LDPKACPPMDCDAGKDGIPMRRALPLKWTSSTKSF 409
           ++ +A P  D D   D +P+ RAL ++W   T +F
Sbjct: 335 IEKRAAPTFDLDL--DELPVERALGVRWNVETDTF 367


>SB_19267| Best HMM Match : TIL (HMM E-Value=2.5)
          Length = 214

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 341 AGKDGIPMRRALPLKWTSSTKSFAEEEEGCPLPSTPEDQHLLDAEMAEVLK 493
           A +D  P R A+  ++  S  +F +E  GC + S P D+H ++   A V K
Sbjct: 15  ARRDRGPFRFAVLARFRKSHGTFRKENRGC-VRSCPMDKHRVETREACVSK 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,802,553
Number of Sequences: 59808
Number of extensions: 554117
Number of successful extensions: 1561
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)