Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0920
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    30   2.0  
At4g03340.1 68417.m00456 glycosyltransferase family 14 protein /...    29   2.7  
At4g13420.1 68417.m02095 potassium transporter (HAK5) identical ...    28   6.2  
At1g31120.1 68414.m03808 potassium transporter family protein si...    28   6.2  

>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 238 QWLPISIFA*LKQAKMWEVESDIGSQSVSSDGLRRRQGW 354
           QW  +S F    Q   W++E  I S  +S   L++++ W
Sbjct: 335 QWDELSPFLRPNQVSPWDIEHLIPSSDISQSSLKKKKHW 373


>At4g03340.1 68417.m00456 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 448

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -3

Query: 513 LMDNTPAFKTSAISASNRC*SSGVEGSGHPSSSSAKDFVELVHLRGKALRIGIPSLPASQ 334
           L+ NT  FK++AI       +       HP+S S KDF ++V  +    R    + P   
Sbjct: 323 LICNTEEFKSTAIGHDLHYIAWDYPPKQHPNSLSMKDFDKMVKSKAPFARKFHKNDPVLD 382

Query: 333 SIGGHALGSNIRF 295
            I    LG   RF
Sbjct: 383 KIDRELLGRTHRF 395


>At4g13420.1 68417.m02095 potassium transporter (HAK5) identical to
           K+ transporter HAK5 [Arabidopsis thaliana]
           gi|7108597|gb|AAF36490; similar to high-affinity
           potassium transporter AtKUP1p [Arabidopsis thaliana]
           gi|2688979|gb|AAB88901; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 785

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 588 RRLPYFANEFLGLFGGVMGQCSQINLMDNT--PAFKTSAISASNRC*SSGVEGSGHPSSS 415
           R   Y+  EF+     + G   +++  D    P  +T+ + +SN   SSG  GS H SSS
Sbjct: 640 RHFVYYLKEFIHHEHFMSGGGGEVDETDKEEEPNAETTVVPSSNYVPSSGRIGSAHSSSS 699


>At1g31120.1 68414.m03808 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 796

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 292 VESDIGSQSVSSDGLRRRQGWDPDAESLASQMDE 393
           VES IG   +  +G  R   WD D +SL   MDE
Sbjct: 5   VESSIGGGEIDEEGDERGSMWDLD-QSLDQPMDE 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,068,047
Number of Sequences: 28952
Number of extensions: 393591
Number of successful extensions: 1072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)