Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 195 1e-48
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 186 5e-46
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 169 1e-40
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 113 1e-40
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 150 4e-35
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 143 6e-33
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 142 1e-32
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 135 1e-30
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 123 6e-27
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 116 1e-24
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 107 3e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 81 3e-14
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 70 6e-11
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 65 2e-09
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 64 3e-09
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 64 5e-09
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 63 9e-09
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 61 3e-08
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 61 3e-08
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 61 3e-08
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 60 5e-08
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 57 5e-07
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 8e-06
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 51 3e-05
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 51 4e-05
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 51 4e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 50 5e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 50 9e-05
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 46 9e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 43 0.008
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 42 0.019
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 42 0.025
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 38 0.23
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 38 0.23
UniRef50_Q6ZGY2 Cluster: Putative uncharacterized protein OJ1743... 38 0.41
UniRef50_Q01J77 Cluster: OSIGBa0152K17.10 protein; n=5; Oryza sa... 38 0.41
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 38 0.41
UniRef50_A0VKI5 Cluster: ABC-type Fe3+ transport system periplas... 36 1.2
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 2.2
UniRef50_UPI00015B5071 Cluster: PREDICTED: similar to sodium/chl... 35 2.9
UniRef50_A6DX48 Cluster: Chemotaxis histidine protein kinase, Ch... 34 3.8
UniRef50_UPI0000E7F9CB Cluster: PREDICTED: similar to PF6; n=2; ... 34 5.0
UniRef50_Q96K58 Cluster: Zinc finger protein 668; n=20; Tetrapod... 33 6.6
UniRef50_Q821Y4 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_A5FC11 Cluster: Glycoside hydrolase, family 28 precurso... 33 8.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 195 bits (476), Expect = 1e-48
Identities = 99/177 (55%), Positives = 113/177 (63%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+IV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYK
Sbjct: 63 KIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYK 122
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV* 613
LCKVK+ G K VP+LVTHDGRTI L + + ++ G
Sbjct: 123 LCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCM 182
Query: 614 SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G P SFDIVHIKDS GH FATRL NVFIIG G K YISLP
Sbjct: 183 ITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLP 239
Score = 120 bits (288), Expect = 6e-26
Identities = 54/64 (84%), Positives = 58/64 (90%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYALN
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 249 ILKL 260
+ K+
Sbjct: 61 VTKI 64
Score = 105 bits (251), Expect = 2e-21
Identities = 45/56 (80%), Positives = 52/56 (92%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPG
Sbjct: 148 RYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPG 203
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 186 bits (454), Expect = 5e-46
Identities = 91/177 (51%), Positives = 113/177 (63%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYK
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYK 122
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV* 613
LCKV+++ G K +P+LVTHD RTI L K L+ ++ G
Sbjct: 123 LCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCM 182
Query: 614 SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G P SFD+VH+KD+ G++FATRL+N+F+IG G K +ISLP
Sbjct: 183 VTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLP 239
Score = 115 bits (276), Expect = 2e-24
Identities = 51/64 (79%), Positives = 56/64 (87%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 249 ILKL 260
+ K+
Sbjct: 61 VKKI 64
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 169 bits (410), Expect = 1e-40
Identities = 89/176 (50%), Positives = 107/176 (60%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KL
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ + G K +PYL T+DGRTI L K L+ ++ G V
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +HI+DSTGH FATRL NV+ IG GTK ++SLP
Sbjct: 184 TGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239
Score = 109 bits (261), Expect = 1e-22
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 113 bits (271), Expect = 7e-24
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +3
Query: 72 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRI 251
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL +
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 252 LKL 260
K+
Sbjct: 62 KKI 64
Score = 99.1 bits (236), Expect(2) = 1e-40
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 427
+I QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 63 KICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 95.5 bits (227), Expect = 1e-18
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYPDPLIKVND++++D+ T KI DFIKF++ N+CM+TGG NLGR+G I +RERHPG
Sbjct: 180 RYPDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIGVITNRERHPG 235
Score = 91.5 bits (217), Expect(2) = 1e-40
Identities = 47/120 (39%), Positives = 63/120 (52%)
Frame = +2
Query: 425 KYKLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGT 604
+YKLCKVK++ G K +P+LVTHD RTI L K L ++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 605 CV*SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G P SFD+VH+KDSTG++FATRL+N+F+IG G K ++SLP
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLP 271
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 150 bits (364), Expect = 4e-35
Identities = 77/176 (43%), Positives = 104/176 (59%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KL
Sbjct: 64 IVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CK+++ G +PY+VTHDGRTI ++ L+ ++ G
Sbjct: 124 CKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMM 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G P SF+IVHIKD+ G+TF TRLNNVF+IG GT+ ++LP
Sbjct: 184 IGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLP 239
Score = 101 bits (241), Expect = 3e-20
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YALN +
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 249 ILKL*NN 269
+ + N
Sbjct: 61 VTMIVKN 67
Score = 74.5 bits (175), Expect = 3e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GRVG IV RE HPG
Sbjct: 148 RYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPG 203
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 143 bits (346), Expect = 6e-33
Identities = 74/174 (42%), Positives = 99/174 (56%)
Frame = +2
Query: 263 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 442
K++ + VDGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL K
Sbjct: 178 KEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLK 237
Query: 443 VKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SRE 622
V A GP +PY+VTHD RTI K L ++ + L G ++
Sbjct: 238 VTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQ 297
Query: 623 AVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SFDI H+KD+ G+ FATRL N+F++G G K++I LP
Sbjct: 298 GNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELP 351
Score = 62.5 bits (145), Expect = 1e-08
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 29/95 (30%)
Frame = +3
Query: 72 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 173
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 174 ---HKLRECLPLVIFLRNRLKYALNRKRILKL*NN 269
HKLRE LPL + L+ RL YALN + + + N+
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILND 177
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 142 bits (344), Expect = 1e-32
Identities = 75/176 (42%), Positives = 101/176 (57%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL
Sbjct: 78 IVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKL 137
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
+V + G K +P++VTHDGRTI+ + ++ + + G
Sbjct: 138 LRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMV 197
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G ASFDIVH+KD++G FATR+ NVF+IG ISLP
Sbjct: 198 TAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLP 253
Score = 84.6 bits (200), Expect = 3e-15
Identities = 42/73 (57%), Positives = 49/73 (67%)
Frame = +3
Query: 42 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 221
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 222 LKYALNRKRILKL 260
LKYAL K + +
Sbjct: 66 LKYALTAKEAVAI 78
Score = 53.2 bits (122), Expect = 8e-06
Identities = 22/52 (42%), Positives = 37/52 (71%)
Frame = +1
Query: 511 YPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRER 666
Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GRVGTI E+
Sbjct: 163 YVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEK 214
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 135 bits (326), Expect = 1e-30
Identities = 75/176 (42%), Positives = 102/176 (57%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KL
Sbjct: 64 ILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV RV+ G K +PY+VTHDGRTI L KS L ++ S G+
Sbjct: 124 CKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
+ G S IV +KD G +F+T+ N+F+IG GTK++ISLP
Sbjct: 184 IKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLP 239
Score = 91.9 bits (218), Expect = 2e-17
Identities = 38/64 (59%), Positives = 52/64 (81%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ N++
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 249 ILKL 260
L +
Sbjct: 61 SLNI 64
Score = 62.5 bits (145), Expect = 1e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS 657
R+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G ++
Sbjct: 148 RFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFIN 197
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 123 bits (296), Expect = 6e-27
Identities = 72/204 (35%), Positives = 99/204 (48%)
Frame = +2
Query: 173 PQVARVLAPGDFPEESSEVCFEPETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 352
P R P F + + +I Q IKVDGK+RTD P MDV+SI+K
Sbjct: 46 PHKLRECLPHIFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
Query: 353 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSK 532
E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+ L K
Sbjct: 106 GEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIK 165
Query: 533 STIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGAWAPSCPARDIPASFDIVHIKDSTG 712
L+ ++ T+ G WG P SFD H+KD+
Sbjct: 166 VNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANS 224
Query: 713 HTFATRLNNVFIIGXGTKAYISLP 784
++F+ +F+I G K +ISLP
Sbjct: 225 NSFSI----IFVIDKGNKPWISLP 244
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/67 (65%), Positives = 53/67 (79%)
Frame = +3
Query: 60 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALN 239
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYAL
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 240 RKRILKL 260
+ K+
Sbjct: 68 GDEVKKI 74
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 116 bits (278), Expect = 1e-24
Identities = 58/136 (42%), Positives = 77/136 (56%)
Frame = +2
Query: 377 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*T 556
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTI L K
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 557 LQLRRLWTSSSLSPGTCV*SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLN 736
L+ ++ G G + P SFD+VH+KD+ G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 737 NVFIIGXGTKAYISLP 784
N+F+IG G +ISLP
Sbjct: 196 NIFVIGKGNIPWISLP 211
Score = 105 bits (252), Expect = 1e-21
Identities = 46/64 (71%), Positives = 52/64 (81%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYAL
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 249 ILKL 260
+ K+
Sbjct: 61 VKKI 64
Score = 96.3 bits (229), Expect = 8e-19
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYPDPLIK+ND+IQ+D+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPG
Sbjct: 120 RYPDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPG 175
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 107 bits (257), Expect = 3e-22
Identities = 66/168 (39%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I++Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL
Sbjct: 61 ILRQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKL 120
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAI-QTHLS-KSTIPSS*TLQLRRLWTSSSLSPGTCV 610
KV + T VP VTHDG I H S TI + ++ ++ G V
Sbjct: 121 MKVVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYN--VKEKKCVDLIKNRQGKAV 178
Query: 611 *SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIG 754
G P +F+I H+KD++G FATR N+F+IG
Sbjct: 179 IVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIG 226
Score = 95.1 bits (226), Expect = 2e-18
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3
Query: 84 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRK 245
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYALN +
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAR 56
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYPDP + D+I ++ K +D IK G ++TGG N GR+G IV E HPG
Sbjct: 145 RYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPG 200
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 81.4 bits (192), Expect = 3e-14
Identities = 39/84 (46%), Positives = 59/84 (70%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTI 508
KV + + +PY+V+ G +I
Sbjct: 124 TKVTKKYEN-QGIPYIVSSCGLSI 146
Score = 71.3 bits (167), Expect = 3e-11
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA N K
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 249 I 251
+
Sbjct: 61 L 61
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 70.1 bits (164), Expect = 6e-11
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Frame = +2
Query: 275 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 454
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 65 VLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNK 124
Query: 455 ATGPKNVPYLVTHDGRTIAIQ-THLSKSTIPSS*TLQL----RRLWTSSSLSPGT---CV 610
T V L DGR I ++ LS+ +P+ TL++ +++ T+ ++ G +
Sbjct: 125 TTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMII 184
Query: 611 *SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIG 754
R A G + A+ + +V ++ G TF T L NV IG
Sbjct: 185 GGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIG 232
Score = 33.9 bits (74), Expect = 5.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 227
H+ R AP + K + R GPHK++E +PL I L+ LK
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLK 48
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/86 (37%), Positives = 50/86 (58%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAI 514
CK+ +T + HDG+ + I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVII 148
Score = 46.8 bits (106), Expect = 7e-04
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 78 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILK 257
G +KHLK APK W + + +PS G H + L L + +R+ LK A N + +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 258 L*NN 269
+ N+
Sbjct: 65 IINS 68
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 64.5 bits (150), Expect = 3e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL
Sbjct: 67 ILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKL 126
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQ 517
+++R T HDGR + I+
Sbjct: 127 AQIRRKMTVKNGDLQFTLHDGRNVLIR 153
Score = 45.6 bits (103), Expect = 0.002
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 60 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALN 239
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 240 RKRILKL 260
K ++
Sbjct: 61 MKEARRI 67
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 63.7 bits (148), Expect = 5e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +3
Query: 75 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRIL 254
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA N +
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 255 KL 260
K+
Sbjct: 64 KI 65
Score = 50.0 bits (114), Expect = 7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 434 LCKV--KRVATGPKNVPYLVTHDGR 502
LCK+ K V G N+ L HDGR
Sbjct: 122 LCKIVNKTVVKG-GNI-QLNLHDGR 144
Score = 34.3 bits (75), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 517 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 663
+ + K DS+ + I I + F G L ITGG+++G IV E
Sbjct: 158 EDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 62.9 bits (146), Expect = 9e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ L+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL
Sbjct: 60 ILANGLVKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKL 117
Query: 437 CKVKRVATGPKNVPYLVTHDGRT 505
KV+ P N L THDGRT
Sbjct: 118 LKVRSKVIAPGNRIQLGTHDGRT 140
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ ++KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL
Sbjct: 61 ILNNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKL 120
Query: 437 CK-VKRVATGPKNVPYLVTHDGRTI 508
K VK+ G + L HDG+TI
Sbjct: 121 FKVVKKTIIGTGKI-QLGFHDGKTI 144
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 61.3 bits (142), Expect = 3e-08
Identities = 56/175 (32%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ + +KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+
Sbjct: 59 IIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKV 118
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAI-QTHLSKSTIPSS*TLQLR--RLWTSSSLSPGTC 607
C+++ L HDGR I + Q K S + L +L + P
Sbjct: 119 CRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQY 178
Query: 608 V*SREAVTWGA------WAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIG 754
V + V G W S RD A+ V KDS F T LN + +IG
Sbjct: 179 VIAFNGVNVGRHGTLINWVRSFRKRDAIAT---VKAKDS---EFRTVLNYLLVIG 227
Score = 45.2 bits (102), Expect = 0.002
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 233
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYA 50
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 78 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 233
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYA 59
Score = 60.1 bits (139), Expect = 7e-08
Identities = 28/88 (31%), Positives = 49/88 (55%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAIQ 517
+C++K + HDG+ ++
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGKNWLVE 154
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 60.5 bits (140), Expect = 5e-08
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 14/191 (7%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKY 430
+++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 64 KLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDL 122
Query: 431 KLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV 610
K +++ T L HDGR I ++ ++ + R + T PG +
Sbjct: 123 KPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVED----VYRTMDTLLITVPGQEI 178
Query: 611 *SREAVTWGAWAPSCPARDI-------------PASFDIVHIKDSTGHTFATRLNNVFII 751
GA A R++ +V ++D++G+ F T L+ VF+I
Sbjct: 179 KGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVI 238
Query: 752 GXGTKAYISLP 784
G + ISLP
Sbjct: 239 GL-DRPVISLP 248
Score = 46.8 bits (106), Expect = 7e-04
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRK 245
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA +
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 246 RILKL 260
KL
Sbjct: 61 EARKL 65
Score = 38.3 bits (85), Expect = 0.23
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 517 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRER 666
+ + + D++ + + +I IKF G + +I GGRN+GRVG + S ++
Sbjct: 160 EDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQK 209
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 57.2 bits (132), Expect = 5e-07
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ + +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL
Sbjct: 60 IISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKL 119
Query: 437 CKVKRVATGPKNVPYLVTHDGRTI 508
+V+ L HDGR +
Sbjct: 120 LRVEGKTMVKGGRIQLHFHDGRNL 143
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 90 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 233
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYA 51
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 53.2 bits (122), Expect = 8e-06
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 451
+ VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++
Sbjct: 71 VLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRK 130
Query: 452 VATGPKNVPYLVTHDGRT 505
V+ + Y +T DGRT
Sbjct: 131 VSVRGGKIQYTLT-DGRT 147
Score = 46.4 bits (105), Expect = 9e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 84 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILKL 260
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A N + + L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 261 *NN 269
NN
Sbjct: 66 LNN 68
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 51.2 bits (117), Expect = 3e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I+ + + VDGKVR D Y G D +SI N +R++ + G+F H + +A K
Sbjct: 60 KILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAK 117
Query: 434 LCKVKRVATGPKNVPYLVTHDGRT-IAIQTHLSKSTI 541
+CK+ L HDG T IA + +K ++
Sbjct: 118 ICKIVNKTALRGGKIQLNLHDGTTMIASNDYKTKDSV 154
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILKL 260
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A N I K+
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 50.8 bits (116), Expect = 4e-05
Identities = 28/82 (34%), Positives = 43/82 (52%)
Frame = +2
Query: 269 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 448
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 449 RVATGPKNVPYLVTHDGRTIAI 514
+T + HDGR I +
Sbjct: 123 GKSTITDGKTQIHLHDGRNILV 144
Score = 44.4 bits (100), Expect = 0.004
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILKL 260
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A N + ++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRM 61
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/84 (30%), Positives = 43/84 (51%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ + + VDG R D +P G DV+++ NE +R++ D KGR ++++ E KL
Sbjct: 59 ILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKL 117
Query: 437 CKVKRVATGPKNVPYLVTHDGRTI 508
C++ T L +DG I
Sbjct: 118 CRINNKTTVKGGKIQLNLNDGTNI 141
Score = 41.5 bits (93), Expect = 0.025
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNR---KRIL 254
H KRL+ PK+W + + G + GPH LPL + +R+ LK N KRIL
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRIL 60
Score = 37.1 bits (82), Expect = 0.54
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 538 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 654
DS+ L I ++ +KFE GNL M+ GG++ G G I+
Sbjct: 151 DSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIM 189
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 50.4 bits (115), Expect = 5e-05
Identities = 23/87 (26%), Positives = 42/87 (48%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
++VK + V+GK +P MD +S N+ +R++ G+ T++ I E K
Sbjct: 63 KVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLK 122
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAI 514
+CKV ++ ++T D R + I
Sbjct: 123 ICKVIKIINASSKNKIIITDDLRELKI 149
Score = 41.5 bits (93), Expect = 0.025
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 526 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGFLRHCAH 696
IKV DS+ + +I+ +KFE G+LC+IT G++LG + ++ R LR H
Sbjct: 154 IKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTI-AVIKEIRKTKSLRKMIH 209
Score = 33.5 bits (73), Expect = 6.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A N +
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 249 ILKL 260
K+
Sbjct: 61 AQKV 64
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 49.6 bits (113), Expect = 9e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I+ QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +
Sbjct: 58 KILHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTR 117
Query: 434 LCKVKRVAT 460
LCK++ T
Sbjct: 118 LCKIRNKTT 126
Score = 37.5 bits (83), Expect = 0.41
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 87 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILKL 260
K+LKRL AP +W + K + + + GPH LP+ ++LR + A N + K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 517 DPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIV 654
D K DS+ + + T +I+D + GN+ MI GG++ G+VG IV
Sbjct: 145 DNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIV 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 46.4 bits (105), Expect = 9e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 96 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRILKL 260
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++ALN K + K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
Score = 39.9 bits (89), Expect = 0.076
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Frame = +2
Query: 104 KRSQSMDVGQTWRCVCTETVNRS--PQVARVLAPGDFPEESSEVCFEPETNPEIVKQRLI 277
KR + D Q R V+ S P L G + + + + +I+ R +
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHDGSALPIGIWLRDHMQFALNTKEVRKILHDRQV 64
Query: 278 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 457
++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 65 LLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKT 124
Query: 458 T 460
T
Sbjct: 125 T 125
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 43.2 bits (97), Expect = 0.008
Identities = 19/64 (29%), Positives = 37/64 (57%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
++ + + VDG R D +P G MD+++I N +R++ D K R ++++ A KL
Sbjct: 60 VLSEGNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KL 118
Query: 437 CKVK 448
C+++
Sbjct: 119 CRIE 122
Score = 42.3 bits (95), Expect = 0.014
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNR---KRIL 254
H KR++ PK+W + K + GPH + +PL + LR+ L NR KR+L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVL 61
Score = 41.9 bits (94), Expect = 0.019
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 538 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 651
DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 152 DSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 41.9 bits (94), Expect = 0.019
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 90 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRK 245
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA NRK
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRK 54
Score = 41.9 bits (94), Expect = 0.019
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +2
Query: 275 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 454
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 65 VLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTK 124
Query: 455 ATGPKNVPYLVTHDGRTIAIQ 517
L HDG T+ ++
Sbjct: 125 THVSGGDVQLGLHDGETLIVE 145
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 41.5 bits (93), Expect = 0.025
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 526 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 663
IK DS+ + I +I+D +KF GN ITGG ++G + TI S E
Sbjct: 148 IKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIE 193
Score = 35.5 bits (78), Expect = 1.6
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ L+ VDGKV + GFMD +++ + L + YD KG+ I E KL
Sbjct: 60 ILTNSLVMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKL 117
Query: 437 CKVKRVATGPKNVPYLVTHDGRTI 508
+VK + HDG T+
Sbjct: 118 LRVKGKTYVKGGRIQISFHDGSTM 141
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 38.3 bits (85), Expect = 0.23
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 761 CXCRL*TRCSTSWRRCVPWSP*CAQCRRKPGC--LSRDTMVPTRPKLRP 621
C CR R RRC PWSP CAQ R GC L RD R + RP
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQ--RNGGCMQLCRDVQGAARCECRP 189
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 38.3 bits (85), Expect = 0.23
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -2
Query: 247 RFRFKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CFLGP 77
RF FKA FR+ +RK+ G+H+ +D A+T PSL H KR++ F+G
Sbjct: 14 RFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIFIGM 71
Query: 76 RAML 65
R+ L
Sbjct: 72 RSYL 75
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 38.3 bits (85), Expect = 0.23
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 242 ETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 388
E +I KQ+ +KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 125 EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_Q6ZGY2 Cluster: Putative uncharacterized protein
OJ1743_B12.31; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1743_B12.31 - Oryza sativa subsp. japonica (Rice)
Length = 82
Score = 37.5 bits (83), Expect = 0.41
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -1
Query: 770 TPLCXCRL*TRCSTS-WRRCVPWSP*CAQCRRKPGCLSRD-TMVPTRPKLRPPVIIHKFP 597
TP C CS S W RC WS CA RR CL P P RP +H+ P
Sbjct: 11 TPAAACS----CSLSPWTRCSSWSLGCATSRRSLPCLCTSLRATPLLPLHRPCRRLHRCP 66
Query: 596 DSNLMKSI-IFVVAMS 552
+ S+ +FV +S
Sbjct: 67 PPRRVVSLFVFVAPLS 82
>UniRef50_Q01J77 Cluster: OSIGBa0152K17.10 protein; n=5; Oryza
sativa|Rep: OSIGBa0152K17.10 protein - Oryza sativa
(Rice)
Length = 444
Score = 37.5 bits (83), Expect = 0.41
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 607 CMITGG-RNLGRVGTIVSRERHPGFLRHCAHQGLHGTHLRHEVEQRVHNRQXHKGVHLAA 783
C TGG T + R G H H HG + RH++ +R R H+ L A
Sbjct: 7 CWATGGVAAAATAATTTTTSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVA 66
Query: 784 ARQGHPLXNRPXNG 825
G P+ + G
Sbjct: 67 RATGVPMTSSKAAG 80
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 37.5 bits (83), Expect = 0.41
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 275 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 454
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 71 VEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSK 130
Query: 455 ATGPKNVPYLVTHDGRTI 508
+ + HDGR++
Sbjct: 131 TSISGGRTQIGFHDGRSL 148
>UniRef50_A0VKI5 Cluster: ABC-type Fe3+ transport system periplasmic
component-like; n=1; Delftia acidovorans SPH-1|Rep:
ABC-type Fe3+ transport system periplasmic
component-like - Delftia acidovorans SPH-1
Length = 674
Score = 35.9 bits (79), Expect = 1.2
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = -1
Query: 788 RAAARCTPLCXCRL*TRCSTSWRRCVPWSP*CAQCRRKPGCLSRDTMVPTRP 633
RAAARC C R RC S R +P CA R +P + T V TRP
Sbjct: 28 RAAARCWAWCCPRSPIRCLPSACRALPRRRRCAAMRFRPAPPNTTTPVKTRP 79
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 2.2
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 201 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 55
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_UPI00015B5071 Cluster: PREDICTED: similar to sodium/chloride
dependent transporter; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to sodium/chloride dependent
transporter - Nasonia vitripennis
Length = 1583
Score = 34.7 bits (76), Expect = 2.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 516 RPTYQ-SQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLP 680
RPT S R HP H Y + + R+++ RP + RGH+ V R R P
Sbjct: 1436 RPTSNHSDRLHPHPHNQYRSNTIDRSSCRDIISTIERPPMNHRGHYTVDRNAGRRP 1491
>UniRef50_A6DX48 Cluster: Chemotaxis histidine protein kinase,
CheA3; n=1; Roseovarius sp. TM1035|Rep: Chemotaxis
histidine protein kinase, CheA3 - Roseovarius sp. TM1035
Length = 1243
Score = 34.3 bits (75), Expect = 3.8
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +2
Query: 173 PQVARVLAPGDFPEESSEVCFEPETNPEI-VKQR---LIKV-DGKVRTDPTYPAGFMDVV 337
P A V AP PE EPE P+ K R ++++ +GK+R DPTY F D+V
Sbjct: 367 PAPAPVAAPEPEPEPEVAAAPEPEAAPQKKTKARPKPVVEITEGKLRADPTYHQIFADMV 426
Query: 338 --SIEKTNEL 361
++EK + L
Sbjct: 427 AKTLEKLDAL 436
>UniRef50_UPI0000E7F9CB Cluster: PREDICTED: similar to PF6; n=2;
Gallus gallus|Rep: PREDICTED: similar to PF6 - Gallus
gallus
Length = 1097
Score = 33.9 bits (74), Expect = 5.0
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2
Query: 128 GQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFEPETNPEIVKQR 271
G TW TV+RSP VL P P ES + EPE PE+ +R
Sbjct: 502 GSTWVLFADGTVSRSPDSGPVLPPPVIP-ESMQPLSEPEPLPEMDTKR 548
>UniRef50_Q96K58 Cluster: Zinc finger protein 668; n=20;
Tetrapoda|Rep: Zinc finger protein 668 - Homo sapiens
(Human)
Length = 619
Score = 33.5 bits (73), Expect = 6.6
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 128 GQTWRCV-CTETVNRSPQVARVLA---PGDFPEESSEVCFEPETNPEIVKQRLIKVDGKV 295
G+ ++C+ CT+T +P+ AR A P D EE +EV +PET + + KV G
Sbjct: 19 GRRYKCLSCTKTFPNAPRAARHAATHGPADCSEEVAEVKPKPETEAKAEEASGEKVSGSA 78
Query: 296 RTDPTY 313
Y
Sbjct: 79 AKPRPY 84
>UniRef50_Q821Y4 Cluster: Putative uncharacterized protein; n=1;
Chlamydophila caviae|Rep: Putative uncharacterized
protein - Chlamydophila caviae
Length = 328
Score = 33.1 bits (72), Expect = 8.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 300 VLTFPSTFXRRCFTISGFVSGSKHTSDDSSGKSPGASTRATCGDRLTVSVHTH 142
VL F ++F RCFT VS +H+S P AS T D T ++ H
Sbjct: 74 VLLFSASF--RCFTCCALVSRFQHSSSRLRIDDPAASQLTTLSDETTENIEHH 124
>UniRef50_A5FC11 Cluster: Glycoside hydrolase, family 28 precursor;
n=2; root|Rep: Glycoside hydrolase, family 28 precursor
- Flavobacterium johnsoniae UW101
Length = 448
Score = 33.1 bits (72), Expect = 8.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 535 NDSIQLDIATTKIMDFIKFESG--NLCMITGGRNLGRVGTIVSRERHPGFLRHCAHQGLH 708
ND I + A +++ + F++G N+ + G + GR T E +R+C +GLH
Sbjct: 242 NDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENI--VIRNCNFKGLH 299
Query: 709 GTHLRHEVEQRVHN 750
G + E+ V N
Sbjct: 300 GVVIGSEMSAGVQN 313
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,550,567
Number of Sequences: 1657284
Number of extensions: 19469492
Number of successful extensions: 58346
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 55090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58237
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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