Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 180 2e-46
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 180 3e-46
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 179 4e-46
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 29 0.80
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 29 1.1
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 28 1.4
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 1.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.9
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 180 bits (439), Expect = 2e-46
Identities = 92/176 (52%), Positives = 112/176 (63%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKVKRV G K VP+LVTHDGRTI L K L+ ++ + V
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+I+H+KD+ FATRL+NVF+IG K++ISLP
Sbjct: 184 TGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLP 239
Score = 106 bits (254), Expect = 4e-24
Identities = 44/61 (72%), Positives = 51/61 (83%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYALN +
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 249 I 251
+
Sbjct: 61 V 61
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 180 bits (437), Expect = 3e-46
Identities = 91/176 (51%), Positives = 112/176 (63%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKVKRV G K VP+LVTHDGRTI L K L+ ++ + V
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+I+H+KD+ FATRL+NVF+IG K++ISLP
Sbjct: 184 TGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLP 239
Score = 106 bits (254), Expect = 4e-24
Identities = 44/61 (72%), Positives = 51/61 (83%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYALN +
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 249 I 251
+
Sbjct: 61 V 61
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 179 bits (436), Expect = 4e-46
Identities = 91/176 (51%), Positives = 112/176 (63%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKVKRV G K VP+LVTHDGRTI L K L+ ++ + V
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+I+H+KD+ FATRL+NVF+IG K++ISLP
Sbjct: 184 TGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLP 239
Score = 106 bits (254), Expect = 4e-24
Identities = 44/61 (72%), Positives = 51/61 (83%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYALN +
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 249 I 251
+
Sbjct: 61 V 61
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 29.1 bits (62), Expect = 0.80
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 215 ESSEVCFEPETNPEIVK---QRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYD 379
+SSEV F PE E+ K ++ I+ G DP+Y +D +S+++ + RL+ D
Sbjct: 181 DSSEVDFPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED 240
Query: 380 VKGRFTIHRITPEEAKYKLCKVKRV 454
+ + R+ E +C + +
Sbjct: 241 ---KELMKRVAEENIMLTMCPLSNL 262
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 28.7 bits (61), Expect = 1.1
Identities = 26/62 (41%), Positives = 31/62 (50%)
Frame = -3
Query: 363 NSSLVFSIETTSINPAG*VGSVLTFPSTFXRRCFTISGFVSGSKHTSDDSSGKSPGASTR 184
+SSLV S TS +P+ V S + PS TIS VS S TS SSG S S+
Sbjct: 127 SSSLVSSTTLTSSSPSA-VSSTTSIPSISS----TISSSVSTSSFTSLSSSGFSTVLSST 181
Query: 183 AT 178
T
Sbjct: 182 NT 183
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +2
Query: 197 PGDFPEESSEVCFEPETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 376
P D S++ ++P++ P+ + + V + + D P ++ + K N+L +
Sbjct: 92 PDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSEYKLDR--PVTLREL-KMHKENQLKSMEL 148
Query: 377 DVKGRFTIHRITPEEAKY 430
+ R +I R+ PEE K+
Sbjct: 149 LNRSRLSISRVKPEEWKF 166
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 239 PETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 418
P P K++ K+ +R + +P + +I + F + G + +I
Sbjct: 6 PPEGPN-AKRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSF 64
Query: 419 EAKYKLCKVK-RVATGPKNVPYLVTHDGR 502
K LC V T PKN Y+V GR
Sbjct: 65 SLKCHLCSNPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 528 QSQRFHPVRHCNYED 572
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 329 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVP 478
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVP 1767
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 424 SLLRGDTVDCESALNIID*TKQ 359
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,141
Number of Sequences: 5004
Number of extensions: 77416
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -