Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 156 2e-38
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 155 3e-38
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 155 4e-38
04_04_0040 + 22322839-22324173 38 0.013
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.1
12_02_0735 - 22636835-22639502,22639755-22640734 30 2.6
06_02_0244 - 13445023-13445400,13445495-13446823 29 3.4
02_05_0202 + 26708049-26709074 29 3.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.5
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 6.0
07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378... 29 6.0
06_01_0866 + 6582131-6583294 29 6.0
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 6.0
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 29 6.0
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 29 6.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.9
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 28 7.9
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 156 bits (379), Expect = 2e-38
Identities = 80/176 (45%), Positives = 103/176 (58%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KL
Sbjct: 64 ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ V G K +PYL T+DGRTI L K+ L+ ++ G V
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +H++D+ GH FATRL NVF IG G K ++SLP
Sbjct: 184 TGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLP 239
Score = 108 bits (260), Expect = 5e-24
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 155 bits (377), Expect = 3e-38
Identities = 81/176 (46%), Positives = 103/176 (58%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KL
Sbjct: 80 ILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKL 139
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ V G K +P+L T+DGRTI L K+ L+ ++ G V
Sbjct: 140 CKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMV 199
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +H++D+ GH FATR+ NVF IG K ++SLP
Sbjct: 200 TGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLP 255
Score = 105 bits (253), Expect = 3e-23
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +3
Query: 72 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRI 251
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYAL + +
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 252 LKL 260
+ +
Sbjct: 78 ISI 80
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 155 bits (376), Expect = 4e-38
Identities = 79/176 (44%), Positives = 103/176 (58%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KL
Sbjct: 64 ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ V G K +PYL T+DGRTI + K+ L+ ++ G V
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +H++D+ GH FATRL NVF IG G K ++SLP
Sbjct: 184 TGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLP 239
Score = 108 bits (260), Expect = 5e-24
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>04_04_0040 + 22322839-22324173
Length = 444
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 607 CMITGG-RNLGRVGTIVSRERHPGFLRHCAHQGLHGTHLRHEVEQRVHNRQXHKGVHLAA 783
C TGG T + R G H H HG + RH++ +R R H+ L A
Sbjct: 7 CWATGGVAAAATAATTTTTSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVA 66
Query: 784 ARQGHPLXNRPXNG 825
G P+ + G
Sbjct: 67 RATGVPMTSSKAAG 80
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 213 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 112
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAHAPQVTASRDHTQVP 598
PL NT+ +++A PVE L C +S + G L+ A TAS T VP
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGALLS----FEALAETASFARTWVP 474
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 140 RCVCTETVNRSPQVARVL--APGDFPEESSEVCFEPETNPEIVKQRLIK 280
R +C ETVNR ++ ++ A G SSEV F ET EI+ + L K
Sbjct: 518 RILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIF-LETVSEIIDRHLDK 565
>02_05_0202 + 26708049-26709074
Length = 341
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 720 KVCPVESLMCTMSKEAGMSLAGHDGAHAPQVTASRDHTQVPG 595
K P E C +G +L GH +H A+ H Q PG
Sbjct: 258 KAPPHECPYCYRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 226 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 98
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 185 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 72
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>07_01_0507 +
3777505-3777762,3780286-3780390,3780740-3780796,
3781534-3781863
Length = 249
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -1
Query: 815 GRLXSGCPCRAAARCTPLCXCRL*TRCSTSWRRCVP----WSP*CAQCRRKPGCLSRDTM 648
GR+ R+ ARCT + S +WR W+P CA+ + R TM
Sbjct: 52 GRVMELLDARSVARCTAV---------SRAWRGVAADDRLWAPKCAELMAGKAHIPRLTM 102
Query: 647 VPTRPKL 627
+PT KL
Sbjct: 103 IPTASKL 109
>06_01_0866 + 6582131-6583294
Length = 387
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 574 MDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGFL 681
+ F+ F + + ++ GG+ LG G E HPG L
Sbjct: 298 LHFMNFPATPMALLPGGQQLGLAGAGGGGEGHPGIL 333
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSL 661
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGALL 446
>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 756 LPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAHAPQVTA 622
LPI N L AK+ V +CTM +++ L GH+ + P++ +
Sbjct: 956 LPIKNDLIE--AKI--VHEQLCTMLEKSDRELLGHNNQYLPKIVS 996
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 284 QPLXGVVSQFQDSFPVQSILQTIPQENHQ 198
QP G+ S F+ S+P+Q I +++P +HQ
Sbjct: 85 QPFIGIFSPFK-SYPLQVIRESLPLAHHQ 112
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 362 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 466
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 603 VPGLKLDEVHNLRSCNV*LDGIVDFDKWVW---IAMVRPSCVTKYGTFLGPVATRLTLH 436
VPG+ + C + L + +F+KWV ++RP+ + KYG L + L+
Sbjct: 179 VPGVYSFAMLQPNFCEMLLQEVENFEKWVHTMKFKIMRPNTMNKYGAVLDDFGLEVMLN 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,416,731
Number of Sequences: 37544
Number of extensions: 571832
Number of successful extensions: 1768
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -