Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 31 1.1
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 31 1.5
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12) 31 1.5
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 30 2.6
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 29 4.6
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 8.0
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07) 28 8.0
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 28 8.0
SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0) 28 8.0
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 8.0
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 183 bits (446), Expect = 1e-46
Identities = 94/177 (53%), Positives = 112/177 (63%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+IVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYK
Sbjct: 487 KIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYK 546
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV* 613
L +V+RV G K VPY+VTHD RTI K ++ ++ G
Sbjct: 547 LGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAM 606
Query: 614 SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SFDIVH+KD+TGH FATRL N+F+IG G K Y+SLP
Sbjct: 607 VVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLP 663
Score = 122 bits (295), Expect = 3e-28
Identities = 53/64 (82%), Positives = 59/64 (92%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALN +
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484
Query: 249 ILKL 260
+ K+
Sbjct: 485 VKKI 488
Score = 84.6 bits (200), Expect = 9e-17
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +1
Query: 508 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 675
RYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG + RE+H G
Sbjct: 572 RYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAG 627
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 179 VARVLAPGDFPEESSEVCFEPETNPEIVKQRLIKVDGKVRTDPTY 313
+ L+ D+ + + PE N ++ K+ LIKV+ T P Y
Sbjct: 192 IEETLSTLDYAHRAKNILNRPEVNQKLTKRALIKVNTPYTTSPAY 236
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -3
Query: 642 HAPQVTASRDHTQVPGLKLDEVHNLRSCNV*L--DGIVDFDKWVWIAMVRPSCVTKYGTF 469
H+P + + T + L LR L G ++ D + WI ++ C Y T
Sbjct: 813 HSPSPARNPESTNIHVQNLVRPFTLRQLKELLGKSGTLEEDGF-WIDRIKSHCYVVYTTV 871
Query: 468 LGPVATRLTLHNL 430
G VATR LH +
Sbjct: 872 EGAVATRAALHGV 884
>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
Length = 902
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 748 YEHVVQPRGEGVSRGVLDVHNVEGSRDVSRGTRW 647
Y H+V P+ +S LD + G DV +GT+W
Sbjct: 271 YNHLVDPKSRWMS--ALDPRSFHGGCDVKKGTKW 302
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 657 PRETSRLPSTLCTSRTPRDTPSP 725
P ET LP+TL T+ TP PSP
Sbjct: 123 PTETETLPTTLPTTPTPTKRPSP 145
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 450 VWRPDLRMFRTW*RMMAAPSLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHG 620
VWR D M A S+ RP + Q+F+ +H + Q+ R+++ D G
Sbjct: 321 VWRADQEYLEAMKAMTAVGSIVRPDPRLQKFYEKKHKVFLKMQRDQLEYRQMMVDTG 377
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +2
Query: 218 SSEVCFEPETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 391
SSE + + L++ G + P+YP+ ++ ++ +N+LF + R
Sbjct: 594 SSEYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 211 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 59
RK +R N++G ++GLG+ PP + I F K K F PR K
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111
>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
Length = 564
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 783 GSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAHAPQVT 625
GS+ Y F P+ ++ TLF+ V PV+ + +G+S A D +T
Sbjct: 317 GSDFYQF-PVKVLTTLFSRVVSTFPVKHKKHLFAGMSGISYAILDARDVATIT 368
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 398 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLS 529
I +TP+ K C+V R++TGP +++ +G T+ + T ++
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEG-TLGVITEVT 329
>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
Length = 487
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 727 RGEGVSRGVLDVHNVEGSRDVSRGTR 650
R EG ++G + +GSRD+SRG R
Sbjct: 457 REEGAAQGFKEEKAAQGSRDMSRGAR 482
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 711 PVESLMCTMSKEAGMSLAGHDGAHAPQVTASRDHTQVP 598
P ES + T + A + A + AP++TA+ D T VP
Sbjct: 462 PPESTVATETTVAPETTAAPESTLAPEITAAPDTTMVP 499
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,806,557
Number of Sequences: 59808
Number of extensions: 640809
Number of successful extensions: 1816
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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