Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 161 4e-40
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.8
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 30 2.3
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 30 2.3
Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 28 7.1
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 9.4
U29381-2|AAA68750.2| 174|Caenorhabditis elegans Hypothetical pr... 28 9.4
AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical ... 28 9.4
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 161 bits (392), Expect = 4e-40
Identities = 82/177 (46%), Positives = 107/177 (60%)
Frame = +2
Query: 254 EIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 433
+I+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 434 LCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV* 613
LCKVK V T K VP L T DGRTI K + +++ S PG
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 614 SREAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G +P + DI+HIKDS GH+FATR++NVF+IG G KA +SLP
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLP 238
Score = 100 bits (240), Expect = 1e-21
Identities = 46/62 (74%), Positives = 50/62 (80%)
Frame = +3
Query: 75 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKRIL 254
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYALN
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 255 KL 260
K+
Sbjct: 62 KI 63
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +1
Query: 685 HCAHQGLHGTHLRHEVEQR-VHNRQXHKGVHLAAARQGH 798
H AH HG H RH E H+ H G H GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 685 HCAHQGLHGTHLRHEVEQRVHN--RQXHKGVHLAAARQGH 798
H H G HGTH H + H+ H G H + A GH
Sbjct: 651 HGVHHGHHGTH--HSLAHHGHHGGHGTHHGAHHSPAHHGH 688
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 667 HPGFLRHC-AHQGLHGTHLRHEVEQRVHNRQXHKGVHLAAARQGH 798
H G H AH G HG H H V H H H A A GH
Sbjct: 563 HHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHG--HHAPAHHGH 605
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 667 HPGFLRHCAHQGLHGTHLRHEVEQRVHNRQXHKGVH 774
H G AH G HGTH H E H+ H G H
Sbjct: 409 HHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Frame = +1
Query: 634 GRVGTIVSRERHPGFLRHC-AHQGLHGTHLRHEVEQRVHNRQXHKG----VHLAAARQGH 798
G G + H G H AH G HG H H H+ H G H A A GH
Sbjct: 517 GHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Frame = +1
Query: 667 HPGFLRHC-AHQGLHGTHLRHEVEQRVHNRQXHKG----VHLAAARQGH 798
H G H AH G HG H H H+ H G H A A GH
Sbjct: 470 HHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 685 HCAHQGLHGTHLRHEVEQRVHNRQXHKGVH 774
H H G HGTH H E H+ H G H
Sbjct: 515 HHGHHGEHGTHHGHHGEH--HHAPAHHGHH 542
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 780 SEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAHAPQVTASRDHTQV 601
SE+ P P ++ +L A S T S+ + + A P T R TQ+
Sbjct: 820 SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879
Query: 600 PGLKLDEVHNL 568
G+K E HNL
Sbjct: 880 FGIKASEAHNL 890
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 780 SEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAHAPQVTASRDHTQV 601
SE+ P P ++ +L A S T S+ + + A P T R TQ+
Sbjct: 820 SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879
Query: 600 PGLKLDEVHNL 568
G+K E HNL
Sbjct: 880 FGIKASEAHNL 890
>Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -3
Query: 279 FXRRCFTISGFVSGSKHTSDDSSGK--SPGASTRATCGDRLTVSVHTHRQVCPTSMLWER 106
F R C T GF+S + T+ + G+ + + L ++H+ ++ P+ +L R
Sbjct: 206 FSRNCSTFKGFISQDRSTNITTMGQALTKDVTYMNLLSSNLVSNIHSDSEL-PSLVLKTR 264
Query: 105 LSASNAS*GLAPCWTSIKSRKKRQTQDQSEDSE 7
L + S W+ +++ + + + +S +E
Sbjct: 265 LLLQHFSLAAIKLWSQLEAVRACRYETKSNYTE 297
>Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -3
Query: 279 FXRRCFTISGFVSGSKHTSDDSSGK--SPGASTRATCGDRLTVSVHTHRQVCPTSMLWER 106
F R C T GF+S + T+ + G+ + + L ++H+ ++ P+ +L R
Sbjct: 206 FSRNCSTFKGFISQDRSTNITTMGQALTKDVTYMNLLSSNLVSNIHSDSEL-PSLVLKTR 264
Query: 105 LSASNAS*GLAPCWTSIKSRKKRQTQDQSEDSE 7
L + S W+ +++ + + + +S +E
Sbjct: 265 LLLQHFSLAAIKLWSQLEAVRACRYETKSNYTE 297
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 104 KRSQSMDVGQTWRCVCTETVNRSPQVA--RVLAPGDFPEESSEVCFEPETNPEIVKQRL 274
K + + + QT + ++T ++P+ R L P D EE+ + EP+ P+ ++L
Sbjct: 137 KHQEDLKIAQTPKKTPSKTPKKTPKSLKRRALTPSDDEEEAGPIAPEPKKTPKQSTKKL 195
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = -3
Query: 594 LKLDEVHNLRSCNV*LDGIVDFDKWVWIAMVRPSCVTKYGTFLGPVATRLTLHNLYLASS 415
+K++++H LRS + D ++ + K+ + + + KY +G +H L SS
Sbjct: 499 MKMEKLHILRSITIGNDPVITYKKYKATSQMSTALKAKYYENIGVFGVFALIHGAPLESS 558
Query: 414 GVIRWIV 394
++ I+
Sbjct: 559 PHLKGIL 565
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 386 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTI 508
G+ + R+T E Y+ CK+++ A K VP Y+V H R I
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDI 347
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 827 VPFXGRLXSGCP-CRAAARCTPLCXCR 750
+P + SG P C A + CTP C CR
Sbjct: 872 LPKCQKQCSGAPKCEAGSACTPGCFCR 898
>U29381-2|AAA68750.2| 174|Caenorhabditis elegans Hypothetical
protein F35D11.4 protein.
Length = 174
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 80 P*EAFEALKRSQSMDVGQTWRCVCTETVNRSPQ----VARVLAPGDFPEESSEVCFEPET 247
P E +ALK S +G T T+ Q + RV GDF E EVC PE
Sbjct: 83 PSEVLDALKLSLQSSMGVKGEVKKTRTLVLHGQTRIHIDRVDGLGDFME--LEVCLSPEE 140
Query: 248 NPE 256
PE
Sbjct: 141 TPE 143
>AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical
protein Y73B3A.4 protein.
Length = 569
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 239 PETNPEIVKQRLIKVDGKV-RTDPTYPAGFMDVVSIEKTNELFRL 370
P +PEI K R++ + GK+ +P +DV ++E E +L
Sbjct: 10 PPDDPEIEKNRILSIFGKILSNEPVQQLTAIDVQNVELAIEKIQL 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,403
Number of Sequences: 27780
Number of extensions: 457795
Number of successful extensions: 1455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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