Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0917
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.12 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.49 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.49 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 424 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 308
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
 Frame = +2

Query: 155  ETVNRSPQVARVLAPGDFPEESSEVCFE---PETN--PEIVKQRLIKVDGKVRTDPTYPA 319
            E +NR+  V +   PG   + S     E   P  +  P   + R+ ++   VRT    P 
Sbjct: 701  ELMNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQIPQ 760

Query: 320  GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK--YKLCKVKRVATGPKNVPYLVTH 493
            GF D+V  +K  E   L   +  R+        EAK  YK+  V+    G  NV + V H
Sbjct: 761  GFKDLVQ-KKCEERGILFMPIPNRY-------REAKQIYKVGNVQAYIDG--NVVF-VCH 809

Query: 494  DGRTIAIQTHLS 529
            +G    + THL+
Sbjct: 810  NGMN-WMPTHLN 820


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 241 RFKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 128
           RF  Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 79  RFPPYNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 287 HQPLXGVVSQ---FQDSFPVQSILQTIPQENHQGQALAQLV 174
           H P+ G+ S+   F D     S L+T+P  +HQ     +L+
Sbjct: 122 HIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVELL 162


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 466 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 347
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 131 QTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFEPETNPEI 259
           +TW  V    V+  P+ A      +F +   E  FEP   P++
Sbjct: 238 ETWTRVFNTLVDLVPKHACAEYRRNFKKMQEEKIFEPHRIPQL 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,973
Number of Sequences: 438
Number of extensions: 5879
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)