Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0917
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 169 1e-42
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 169 3e-42
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 169 3e-42
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.93
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine... 29 2.8
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 29 3.8
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 3.8
At5g10730.1 68418.m01243 expressed protein 29 3.8
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 29 3.8
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 5.0
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 5.0
At5g58380.1 68418.m07311 CBL-interacting protein kinase 10 (CIPK... 28 8.7
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 8.7
At2g39690.1 68415.m04869 expressed protein contains Pfam profile... 28 8.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 169 bits (412), Expect = 1e-42
Identities = 89/176 (50%), Positives = 107/176 (60%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KL
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ + G K +PYL T+DGRTI L K L+ ++ G V
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +HI+DSTGH FATRL NV+ IG GTK ++SLP
Sbjct: 184 TGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239
Score = 109 bits (261), Expect = 3e-24
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 169 bits (410), Expect = 3e-42
Identities = 89/176 (50%), Positives = 107/176 (60%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KL
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ + G K +PYL T+DGRTI L K L+ ++ G V
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +HI+DSTGH FATRL NV+ IG GTK ++SLP
Sbjct: 184 TGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239
Score = 109 bits (261), Expect = 3e-24
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 169 bits (410), Expect = 3e-42
Identities = 89/176 (50%), Positives = 107/176 (60%)
Frame = +2
Query: 257 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 436
I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KL
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123
Query: 437 CKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*S 616
CKV+ + G K +PYL T+DGRTI L K L+ ++ G V
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMV 183
Query: 617 REAVTWGAWAPSCPARDIPASFDIVHIKDSTGHTFATRLNNVFIIGXGTKAYISLP 784
G SF+ +HI+DSTGH FATRL NV+ IG GTK ++SLP
Sbjct: 184 TGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239
Score = 109 bits (261), Expect = 3e-24
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 69 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALNRKR 248
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYAL +
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 249 ILKL 260
++ +
Sbjct: 61 VISI 64
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 193 KHSRNLWGPVDGLGAYTPPSLSNIHAL 113
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 268
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 417 SGVIRWIVNLPLTS*IRRNSSLVFSIETTSINPAG*VGSVLTFPSTFXRRCFTISGFVSG 238
+ V W++ PLTS I + L ++E + P G VG S CF + +++G
Sbjct: 193 NSVCPWVITTPLTSFIFSDEKLRKAVEDKT--PMGRVGEANEVSSLVAFLCFPAASYITG 250
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 594 LKLDEVHNLRSCNV*LDGIVDFDKWVWIAMVRPSCVT--KYG 475
++L + + + C+V L F+KW+W M+ PS ++ KYG
Sbjct: 1182 IELGDSNAVERCSV-LQRFHSFEKWMWDNMLHPSALSAFKYG 1222
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSL 661
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGALL 427
>At5g10730.1 68418.m01243 expressed protein
Length = 287
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 239 PETNPEIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 358
P P + + + KV + TDP +P G +DV I++ ++
Sbjct: 244 PLFTPPVNVESVAKVAVRAATDPVFPPGIVDVHGIQRYSQ 283
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 792 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLAGHDGAH 640
LP+ + Y LPI+ L+ KVCP + L T G L D H
Sbjct: 264 LPKNQKNYC---LPIVLEFCKLLRKVCPDQKLYVTCRNTLGSMLETFDNPH 311
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSL 661
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGALL 424
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSL 661
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGALL 448
>At5g58380.1 68418.m07311 CBL-interacting protein kinase 10 (CIPK10)
identical to CBL-interacting protein kinase 10
[Arabidopsis thaliana] gi|13249119|gb|AAK16685; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 10 (CIPK10) GI:13249118
Length = 479
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = -3
Query: 273 RRCFTISGFVSGSKHTSDDSSGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSAS 94
+R I+ +G+ T+++ +G S + + GDR+T HT PT++ L A
Sbjct: 279 KRVKEINSVEAGTAGTNENGAGPSENGAGPSENGDRVTEENHTDE---PTNLNAFDLIAL 335
Query: 93 NAS*GLAPCWTSIKSRKKRQTQDQ 22
+A LA + R+ R T +
Sbjct: 336 SAGFDLAGLFGDDNKRESRFTSQK 359
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 759 PLPIMNTLFNLVAKVCPVESLMCTMSKEAGMSLA 658
PL NT+ +++A PVE + C +S + G L+
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGALLS 403
>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 498
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 416 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIAIQTHLSKSTIPSS*TLQLRRL 574
EE K KL +R + + +T RT+A Q+H+ +ST+P L R L
Sbjct: 62 EELKLKLYSEQRQT---QEIQLQMTEQKRTLARQSHVRQSTLPLRHDLHQRSL 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,160
Number of Sequences: 28952
Number of extensions: 430430
Number of successful extensions: 1284
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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