Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0916
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   4.2  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   5.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.7  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 345 HNLAYLNRRQPVISGLKPLAWRSCVMAIDL*NYGFR*AHNVTSSPVAY 202
           H L Y+N   P   GL   A+ + ++++   N G     N+ ++P A+
Sbjct: 83  HRLRYINYGNPAPFGLSAFAFTTFLLSLFNVNAGHVKVSNMVTAPAAF 130


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 484 TIKSYICCFTYIHILCRNISSVVSSMFS 567
           T+ S I C T +H++C  + SV S++FS
Sbjct: 231 TLSSLIKCTTSVHLIC--MCSVPSTLFS 256


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 471 LNKQDHKKLYLLFYLH 518
           L K+ H+KL LLF+LH
Sbjct: 47  LTKEKHEKLLLLFWLH 62


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 513  GKTTNITFYGLVC*VTTLKSLFIFINIILYVLN 415
            G   +  FYG VC  TT  S F+   +I Y+L+
Sbjct: 1883 GDVRDQAFYGFVCCSTTTNSAFVL--VIHYLLS 1913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,538
Number of Sequences: 5004
Number of extensions: 73485
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)