Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0916
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    29   3.0  

>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -2

Query: 495 TFYGL-VC*VTTLKSLFIFINIILYV--LNTFCIYYFSTGGRENHNPSR--ICRYHNL 337
           T Y + VC V  L  L++ ++I  +V     +C  YF+   REN++P+   I  +H L
Sbjct: 9   TIYEISVCAVEGLMYLYVVLSIPCHVALFPFYCFAYFTNSLRENNSPTAPIIVHFHRL 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,100
Number of Sequences: 27780
Number of extensions: 399695
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)