Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0914
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    62   6e-11
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    30   0.28 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.9  

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 30/63 (47%), Positives = 42/63 (66%)
 Frame = +1

Query: 88  VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYVA 267
           +LD++LF+ +K GNP+ IRE+Q+KR  DV +VD V+E    W  LR E DN NK    V 
Sbjct: 1   MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60

Query: 268 KKL 276
           K++
Sbjct: 61  KEI 63



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
 Frame = +2

Query: 509 ESVPVDDDEDHNLVERTDGDCGF--RKK--YSHVDLICMIDGMDGERGSAVAGGRGYYLK 676
           +SVPV  DED+N + R     G    KK   SH +++  +DG D ERG  V+G RGY+L+
Sbjct: 114 DSVPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLR 173



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 255 NVCSKEIGLKMKNKEPSGS--EDEPVPSEIANNLVNL-TGDNLKPLTV 389
           N   KEIGLKMK KE +    E++   +E   NL+   T  N + L V
Sbjct: 57  NRVQKEIGLKMKAKEDASELLEEKNSLTERKKNLIEQETAKNKEMLNV 104


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 270 EIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK 401
           EIG K K+K P+    E  P  I+  L +L G+N  PL + Q K
Sbjct: 16  EIGNKQKSKTPT----ERRPEGISRELYSLLGENSAPLAIYQKK 55


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 569  CGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 682
            CG  K+YS V ++  +DG++G     V+GG+   L  P
Sbjct: 1116 CGVIKEYSTVVVMGSLDGVEGS-DETVSGGQRLSLDRP 1152


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 143 RILSGLPSLSARNKSKS 93
           R L GLPSLS RN  KS
Sbjct: 130 RSLHGLPSLSRRNSKKS 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,521
Number of Sequences: 5004
Number of extensions: 51760
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)