Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0914
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   2e-17
SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)           83   2e-16
SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)            31   1.2  
SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)             31   1.2  
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   8.3  
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +2

Query: 509 ESVPVDDDEDHNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 682
           +SV + +DED N V+R  GDC  RKKYSHVDL+ M+DG+D +RGS VAG RGY+LKGP
Sbjct: 156 DSVRISNDEDENPVDRIVGDCSVRKKYSHVDLVHMVDGVDIDRGSVVAGSRGYFLKGP 213



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 34/78 (43%), Positives = 46/78 (58%)
 Frame = +3

Query: 273 IGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKXVRVLXXNAXSKXDEGL 452
           + LK   KEP G +DE +P E+ + L  LT + L+ LTV QIK VR L  +  +K +E +
Sbjct: 78  VTLKNMKKEPVG-DDETLPKEVLDGLEELTAEMLQQLTVTQIKIVRTLVDDGMAKCNEEV 136

Query: 453 LAAEKARSAALREVGNHL 506
              EK R+  L EVGN L
Sbjct: 137 ARLEKLRNEKLFEVGNIL 154


>SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)
          Length = 103

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 41/64 (64%), Positives = 48/64 (75%)
 Frame = +1

Query: 85  MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKMYV 264
           MVLDLDL+RADK GNPDKIRENQ KR+ DV LVD VVE DT WRK      N+NKL+   
Sbjct: 40  MVLDLDLYRADKGGNPDKIRENQSKRYSDVTLVDKVVEADTQWRKY-----NWNKLRNLC 94

Query: 265 AKKL 276
           +K++
Sbjct: 95  SKQI 98


>SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)
          Length = 257

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 238 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 107
           C++   ++  +C  RR    GQHL ++ S+   +Y D R+ YRH+
Sbjct: 180 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 224


>SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)
          Length = 223

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 238 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 107
           C++   ++  +C  RR    GQHL ++ S+   +Y D R+ YRH+
Sbjct: 146 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 190


>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +3

Query: 318 EPVPSEIANNLVNLTGDNLKPL-----TVNQIKXVRVLXXNAXSKXDEGLLAAEKARSAA 482
           E VP    NN+ +LTG +L  L     TV+Q+  ++ +      K       A+   +  
Sbjct: 608 ESVPIPPTNNIASLTGAHLNQLIDITATVSQLSTIKTMDTRLGEKDKVECYLADPTSAIK 667

Query: 483 LREVGNHLQSL 515
           L+  G+H   +
Sbjct: 668 LKAWGDHAHEI 678


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 100 DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWR 216
           DLF  D +  PD++     + F DV   +A + +  LWR
Sbjct: 38  DLFEGDIELTPDEVSLLSSQTFDDVTKRNAHLHRQGLWR 76


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 388 TVRGFK-LSPVRFTRLLAISEGTGSSSEPLGSLF 290
           TV G K L+PV   R L +S+GTG ++  + +LF
Sbjct: 370 TVIGLKHLNPVLIQRRLWVSKGTGKNARGIQNLF 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,141
Number of Sequences: 59808
Number of extensions: 384528
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)