Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0913
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZKC1 Cluster: Putative; n=5; Helicobacter|Rep: Putati...    34   3.3  
UniRef50_A5JZC4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  
UniRef50_Q9ZZP7 Cluster: Cytochrome C-type biogenesis protein CC...    34   4.3  
UniRef50_Q6QQW7 Cluster: WbsX; n=1; Shigella boydii|Rep: WbsX - ...    33   7.5  
UniRef50_Q5W2W5 Cluster: Putative uncharacterized protein; n=2; ...    33   9.9  

>UniRef50_Q9ZKC1 Cluster: Putative; n=5; Helicobacter|Rep: Putative
           - Helicobacter pylori J99 (Campylobacter pylori J99)
          Length = 345

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 25/74 (33%), Positives = 33/74 (44%)
 Frame = +2

Query: 449 SIVILLFFTNLFQFSGIQPLKKIFSTTLIFTIRNNYKIQYYLRQIPRFWFFVYIPYLI*A 628
           S V   FF  LF  S I  L  I S TL+  +     +Q +L  +P   FF+ +P    A
Sbjct: 11  SQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFI-LPITFFA 69

Query: 629 RCIGGLISLQIYHQ 670
            C  GL  L   H+
Sbjct: 70  ACALGLSRLSYDHE 83


>UniRef50_A5JZC4 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1547

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
 Frame = -2

Query: 345  YLKTNGLFSRFEN*GQYFFFFVYIGMFIVEGGLQSRA*CYTAFSLRRSNECEQSRYPCRI 166
            Y+K    FS+F N    F F V I MFI       R   Y A  + R    +       +
Sbjct: 1261 YIKLFSFFSKFVNIFYLFLFLVIINMFIFSSNYVKREKLYEALYVNRRQILKCGFLLLLV 1320

Query: 165  FIDF*VHSTTNYKLIPTVLRNIESRLIFKLFLFV*YVN--VILKVNLIFFKVF 13
            +++F +     Y +      +   + I+ + + +  VN  V LK N+ +F  F
Sbjct: 1321 YLNFFLFHYFFYGIDGFNDLSTSQQPIYSILILLGLVNIDVYLKCNVFYFLFF 1373


>UniRef50_Q9ZZP7 Cluster: Cytochrome C-type biogenesis protein CCMF;
           n=1; Cyanidioschyzon merolae|Rep: Cytochrome C-type
           biogenesis protein CCMF - Cyanidioschyzon merolae (Red
           alga)
          Length = 620

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +2

Query: 425 NTKISCSNSIVILLFFTNLFQFSGIQPL-KKIFSTTLIFTIRNNYKIQYYLRQIPRFWFF 601
           +T ++  N ++I L+F  +F F  I  L KK    T IF + N+Y   YY+  +   +F 
Sbjct: 309 HTFVNSPNFLIIFLYFFLVFIFILIVILLKKYTYFTSIFDLNNHYNFVYYIFLLVILYFL 368

Query: 602 -----VYIPYLI 622
                +Y P+LI
Sbjct: 369 YLLFVLYFPFLI 380


>UniRef50_Q6QQW7 Cluster: WbsX; n=1; Shigella boydii|Rep: WbsX -
           Shigella boydii
          Length = 378

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 589 ILVFRIYSVSNLSKMYWWFNKFANLSPKYFIKSVTIGNLNKSAILNRIXD 738
           ++  R YS++N   +Y +F+K  N  P++ I +    +L KS+ L ++ +
Sbjct: 200 LIALRAYSIANADSVYKYFDKIVNFQPRFAINT----HLKKSSPLKKLIE 245


>UniRef50_Q5W2W5 Cluster: Putative uncharacterized protein; n=2;
           Sulfolobus|Rep: Putative uncharacterized protein -
           Sulfolobus islandicus
          Length = 660

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 461 LLFFTNLFQFSGIQPLKKIFSTTLIFTIRNNYKI 562
           L +F+NL  F  +  + +I+++T+ F I  NY++
Sbjct: 542 LQYFSNLLMFFNVSKIPEIYNSTIYFNISGNYEV 575


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,543,901
Number of Sequences: 1657284
Number of extensions: 12599378
Number of successful extensions: 28203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28190
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)