Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0913
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   5.0  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.7  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 280 YKKKKILTSIFESRKQSVSF*VMRNLVIL*IKIKSVCTSNQNYLCNM 420
           Y+KK+I+T I +S+        +   ++L +  KS   S  NYLCN+
Sbjct: 30  YQKKQIVTLILKSK--------ISTAIVL-LSPKSTAASEWNYLCNL 67


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 389 VRPTKITCVIWCNTKISCSNSIVILLFFTNLFQFSGIQPLKKIFSTTLIFTIRNNYKIQ 565
           VRP     ++  N   SC+N +    F   LF++  +Q     +   L   + N+Y  Q
Sbjct: 495 VRPPYKGIILMLNVLDSCTNYVGRYTFLNELFEY--LQEKTTYYKNNLTTLLNNDYIAQ 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,172
Number of Sequences: 5004
Number of extensions: 61267
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)