Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0912
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   139   1e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   138   2e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   138   2e-33
At5g47870.1 68418.m05914 expressed protein                             31   0.50 
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   6.2  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    27   8.2  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    27   8.2  
At1g53180.1 68414.m06027 expressed protein                             27   8.2  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  139 bits (337), Expect = 1e-33
 Identities = 66/97 (68%), Positives = 77/97 (79%)
 Frame = +3

Query: 255 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 434
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 435 MSVRSSDRWKAQVIEALRRAKFKFPDVKKIYVSKEVG 545
           +SVR  D       EALRRAKFKFP  +KI VS++ G
Sbjct: 136 LSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWG 172



 Score =  132 bits (319), Expect = 1e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +1

Query: 31  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 210
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 211 SSEALEAGRICCNKYS*RTA 270
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  138 bits (334), Expect = 2e-33
 Identities = 66/97 (68%), Positives = 77/97 (79%)
 Frame = +3

Query: 255 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 434
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 435 MSVRSSDRWKAQVIEALRRAKFKFPDVKKIYVSKEVG 545
           +SVR  D       EALRRAKFKFP  +KI VS++ G
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWG 172



 Score =  132 bits (318), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +1

Query: 31  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 210
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 211 SSEALEAGRICCNKYS*RTA 270
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  138 bits (334), Expect = 2e-33
 Identities = 66/97 (68%), Positives = 77/97 (79%)
 Frame = +3

Query: 255 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 434
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 435 MSVRSSDRWKAQVIEALRRAKFKFPDVKKIYVSKEVG 545
           +SVR  D       EALRRAKFKFP  +KI VS++ G
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWG 172



 Score =  132 bits (319), Expect = 1e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +1

Query: 31  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 210
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 211 SSEALEAGRICCNKYS*RTA 270
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 291 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 470
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 471 VIEALRRAKFKFPD 512
           +IE LR    K PD
Sbjct: 78  LIEILRDLNKKIPD 91


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 139 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 32
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 312 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 428
           H+ RIN +L    +D    G+ G  G  + T+ARV   Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 420 CEHVLQYPEACQTHHAS 370
           C+ +LQ+P  CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 40  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 144
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,998
Number of Sequences: 28952
Number of extensions: 300271
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)