Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0911
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   3.8  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   3.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   5.0  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   6.6  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 334 NAINRQNVIDIQDEKRGEEPNLVECQRNVHGIRTVTVYND 215
           N +N   V+D +DE+R E+P  V        I+T   +++
Sbjct: 294 NTVNDPQVLDPEDEERLEKPYSVWTSMMQRSIQTAAYFDE 333


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 174 RDPRGPRKMIASTEVPYARPCRRPSRYQGSQQEPRPCSPRLQPTCDRDGNRTVGH 10
           RD R  R+   S    Y+ P RR  RY+  ++  R  SPR     +R+    + H
Sbjct: 41  RDERSSRRYEDSQRRDYS-PARRRDRYERHRESVREESPRRPVEHERNWQPELKH 94


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 266  HKVRFFPTLFILYINDILSID 328
            H +R   +L+I YIND  S+D
Sbjct: 1376 HLIRGLQSLYISYINDSFSVD 1396


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = +2

Query: 428 VSEVENSMGRVSEWGELNLV*FNPDKDQVLRVHCEEGTHLSWRAMLRSTPCXPFR 592
           +++ +N++   + WG+  +     D+D  +++  +E T +++     S P  PFR
Sbjct: 298 ITQEKNTLIYKNLWGDPFITAGGHDRDSAIQMAEQENTLVAFGRYFLSNPDLPFR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,769
Number of Sequences: 5004
Number of extensions: 57062
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)