Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0911
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    37   0.013
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    28   4.6  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   6.1  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   6.1  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   8.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   8.1  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 45  WAEALESKGEALAVSLDIAKAFDRVWHRALLXKLSSYGVPEGLCKWIPSFLDGRRSR 215
           W ++++   +   + LD +KAFDR+ H  LL KL S    + L  W+  FL  R  R
Sbjct: 4   WTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFR 60


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 102 KAFDRVWHRALLXKLSSYGVPEGLCKWIPSFLDGR 206
           KAFD+V H  LL KL  +G+    C W   FL  R
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSR 36


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  REGLRQGLA*GTSVEAIILRGPR 166
           RE + +GLA GT V   + RGPR
Sbjct: 246 RENVHEGLADGTQVTTTVFRGPR 268


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  REGLRQGLA*GTSVEAIILRGPR 166
           RE + +GLA GT V   + RGPR
Sbjct: 218 RENVHEGLADGTQVTTTVFRGPR 240


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 135 EVPYARPCRRPSRYQGSQQE----PRPCSPRLQP 46
           E P  R  R+PSR+  S  +    P PCSP   P
Sbjct: 340 ENPPVRDSRKPSRFSASHADKKHYPAPCSPDANP 373


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 392 RDSDGRYIAHSPCCHPHSNECHQ*TEC 312
           R +DGR +  + C  P  N CH+  +C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 392 RDSDGRYIAHSPCCHPHSNECHQ*TEC 312
           R +DGR +  + C  P  N CH+  +C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 456  ESPNGVN*TWFNSTPIKTKFCAFTAKKEP 542
            ESP GVN +WF+    +     F A K+P
Sbjct: 2495 ESPVGVNISWFSMNNAENPRLVFGASKQP 2523


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 456  ESPNGVN*TWFNSTPIKTKFCAFTAKKEP 542
            ESP GVN +WF+    +     F A K+P
Sbjct: 2495 ESPVGVNISWFSMNNAENPRLVFGASKQP 2523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,974
Number of Sequences: 27780
Number of extensions: 338252
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)