Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0911
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 370 SRIPRAVIRIAMNAINRQNVIDIQDEKRGE 281
           +R+P  V  + ++ + R  +++ Q+E+R E
Sbjct: 307 TRVPGIVRSLVLDKLARIVLLNFQEERRSE 336


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 407 QERRSKLVSEVENSMGRVSEW 469
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -2

Query: 307 DIQDEKRGEEPNLVECQRNVHGIRTVTVYNDRDLRPSKKL 188
           D  + +R  EP ++    N +       YN+     +KKL
Sbjct: 69  DRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKL 108


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 422 LIVSLAPRSERDSDG 378
           L+  + PRS +DSDG
Sbjct: 31  LVYQIYPRSFQDSDG 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,205
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)