Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0910
         (564 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.28 
UniRef50_Q92B50 Cluster: Lin1700 protein; n=1; Listeria innocua|...    33   3.5  
UniRef50_Q7AFM0 Cluster: Rtn-like protein; n=3; Enterobacteriace...    33   4.6  
UniRef50_P76177 Cluster: Protein ydgH precursor; n=41; Enterobac...    33   6.1  
UniRef50_Q9W3V8 Cluster: Probable dolichyl pyrophosphate Glc1Man...    32   8.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.28
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 359 LLKWVDEVTVHPVLSDYWCP 418
           LL+WVDE+T H VLS YW P
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q92B50 Cluster: Lin1700 protein; n=1; Listeria
           innocua|Rep: Lin1700 protein - Listeria innocua
          Length = 308

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 409 LVPIDIYNVNAPPTLRYKF*GLKYSYNGCSTLQTETHYCFHGRNKAAW 552
           LV    YN+ AP T++ K   +  +YN  S+ Q ET YC +  N+ ++
Sbjct: 13  LVSSSKYNIKAPNTMKPKKVTIHNTYNNASS-QNETDYCKNNNNEVSF 59


>UniRef50_Q7AFM0 Cluster: Rtn-like protein; n=3;
           Enterobacteriaceae|Rep: Rtn-like protein - Escherichia
           coli O157:H7
          Length = 510

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 215 PYIITSVFFSLPMLIALRGYFIFTLTCRWGKTKLELA 105
           PY+I++VF+ LP+ I L  + ++ L  RW   K+ LA
Sbjct: 229 PYVISNVFYILPLSILL-SFILYFLWQRWISRKMSLA 264


>UniRef50_P76177 Cluster: Protein ydgH precursor; n=41;
           Enterobacteriaceae|Rep: Protein ydgH precursor -
           Escherichia coli (strain K12)
          Length = 314

 Score = 32.7 bits (71), Expect = 6.1
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -1

Query: 534 AVKAVMRFSLKGGAAVVTILETLELISQGGWRIYVVDVY 418
           AVKAV R + K GAA   +++T +  + G WR+ V D+Y
Sbjct: 52  AVKAVSRRADKEGAASFYVVDTSDFGNSGNWRV-VADLY 89


>UniRef50_Q9W3V8 Cluster: Probable dolichyl pyrophosphate
           Glc1Man9GlcNAc2 alpha-1,3- glucosyltransferase; n=3;
           Diptera|Rep: Probable dolichyl pyrophosphate
           Glc1Man9GlcNAc2 alpha-1,3- glucosyltransferase -
           Drosophila melanogaster (Fruit fly)
          Length = 511

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 221 FAPYIITSVFFSLPMLIALRGYFIFTLTCRWGKTKL 114
           F P ++TSV+ +L +L     Y+++ L   WGK  +
Sbjct: 460 FLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPI 495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,095,375
Number of Sequences: 1657284
Number of extensions: 11596909
Number of successful extensions: 21026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21025
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)