Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0910
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    28   4.5  
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517...    28   4.5  
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    28   4.5  
01_06_1198 + 35341375-35341635,35341750-35341953,35342151-353427...    28   5.9  
01_06_1749 - 39636951-39638102                                         27   7.8  

>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 496 SSRCNYT*DLRTYISRWVAHLRCRCL 419
           S RC  T  LR    RW  HL+C CL
Sbjct: 299 SLRCTGTTVLRNKAPRWHEHLQCWCL 324


>02_04_0466 -
           23149906-23150046,23150129-23150279,23151684-23151785,
           23151893-23152110,23152203-23152325,23152863-23152991,
           23153191-23153274,23154009-23154104,23154735-23154816,
           23155047-23155117,23155269-23155363,23156090-23156276,
           23156586-23156757,23157800-23157948,23158578-23158701,
           23158836-23158991,23159101-23159247,23160470-23160489
          Length = 748

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 143 LTCRWGKTKLELACDDLVFPTASLAAG 63
           LTC+WG  ++EL C   + P  S   G
Sbjct: 3   LTCKWGFARVELRCPRALDPRPSWTLG 29


>01_06_0481 -
           29646245-29646371,29646474-29646556,29646672-29646752,
           29646843-29646899,29647007-29647094,29647304-29647374,
           29647457-29647585,29647662-29648051,29648332-29648517,
           29648612-29648692,29648787-29648879,29648966-29649086,
           29649200-29649409,29649560-29649727,29649898-29650065,
           29650144-29650311,29650453-29650620,29650738-29650905,
           29651023-29651190,29651567-29651734,29652391-29652558,
           29652645-29652812,29655720-29655887,29656069-29656236,
           29656391-29656558,29656670-29656837,29657525-29657664,
           29658033-29658221,29658243-29658315,29658379-29658452,
           29658535-29658654,29658718-29658738,29658794-29658999,
           29659094-29659271,29660066-29660126,29660232-29660341,
           29660427-29660558,29661091-29661258,29661339-29661465,
           29661794-29661831,29663321-29663422,29663505-29663562,
           29663659-29663760,29663844-29663990,29664098-29664234,
           29664313-29664462,29664561-29664720,29665820-29665878,
           29666025-29666181,29666288-29666433,29666523-29666666,
           29667242-29667376
          Length = 2344

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 156 IASQCYQHR*GKKDTCDNIRSKIGTNLFYL*RTYIALETGQYA 284
           +AS+  + +  +K TC  +  K+G   + + RT + L  GQ A
Sbjct: 683 LASEIVKEKNDEKVTCQKVLDKMGLQGYQIGRTKVFLRAGQMA 725


>01_06_1198 +
           35341375-35341635,35341750-35341953,35342151-35342737,
           35342825-35342986,35343096-35343549
          Length = 555

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 226 ELTCFIYKGLTSH*KPDNTQQVNASS 303
           ++T  +YKG  +H KP NT++ + SS
Sbjct: 263 QITEIVYKGTHNHAKPQNTRRNSGSS 288


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 473 SSIVTTAAPPFKLKRITAFTA 535
           SS+ + AAPPF   RIT++ A
Sbjct: 164 SSVASAAAPPFDPSRITSYAA 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,086
Number of Sequences: 37544
Number of extensions: 342665
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)