Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0910
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    30   1.3  

>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
 Frame = +3

Query: 15  RAFFLRMVLGRIDELCSGGERCCGKNEIITS*LKLC----FSPPTR*GENEIASQCYQHR 182
           + FF RM L +I E+C    +C   N  I   L  C    F      G N  A QC  + 
Sbjct: 83  KTFFRRMWLSKIKEMCPLNNKCFDFNRRINMSLSKCRACRFQRCLNVGMNPAAIQCDGN- 141

Query: 183 *GKKDTC-----DNIRSKIGTNLFYL*RTYIALETGQYATS 290
             KKD+      D+I  KI   +  L  TY+ L+   Y  S
Sbjct: 142 -PKKDSSHFRDFDSIDEKIKNIIDTL--TYVELKLENYRKS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,636,582
Number of Sequences: 27780
Number of extensions: 284159
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)