Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0908
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 3e-20
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 33 2e-04
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 41 7e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.035
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.11
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.14
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.19
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.0
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 30 1.3
SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 30 1.3
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 30 1.8
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.8
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11) 30 1.8
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 2.3
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 2.3
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 2.3
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 29 2.3
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 5.4
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 28 7.1
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 28 7.1
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 28 7.1
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 27 9.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 27 9.4
SB_4276| Best HMM Match : DUF288 (HMM E-Value=1e-04) 27 9.4
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 27 9.4
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 95.5 bits (227), Expect = 3e-20
Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Frame = +1
Query: 262 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 441
K SDGL+GLYRGF +S GII+YR YFG YDT + +L ++ +VIS+ + VT
Sbjct: 165 KTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG-EDAGVVISFVLGYGVTV 223
Query: 442 VAGIISYPFDTVRRRMMMQSGRA----RAISCTRTPSTAGLTLPRPKGTRPSLKGAFFKV 609
AG+ SYP DT+RRRMMM SG A +I CT + + + +G +KGA +
Sbjct: 224 SAGLASYPIDTIRRRMMMTSGEAVKYKGSIDCT-------IQILKKEGAMSLMKGAGANI 276
Query: 610 LR 615
LR
Sbjct: 277 LR 278
Score = 65.7 bits (153), Expect = 3e-11
Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +2
Query: 2 ANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXXXTSLCFVYPL 178
AN IRYFPTQALNFAFKD+ K +F KKT F SL FVY L
Sbjct: 78 ANCIRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFVYSL 134
Query: 179 DFARTRLAAD--VGKGDGQREF 238
D+ RTRLA D VGK G+R+F
Sbjct: 135 DYCRTRLANDAKVGKKGGERQF 156
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 33.5 bits (73), Expect(2) = 2e-04
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDT-ARGMLP 384
++KI++ +GL G ++G G ++ I+ Y A F Y+ +G+ P
Sbjct: 598 LAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAP 641
Score = 29.1 bits (62), Expect(2) = 2e-04
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 400 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG 504
P+V VA +YP D VRRRM M+ G
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERG 714
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 247 RKLISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY---DTARGMLPDPKNTPIVISW 417
R + I + +G++ LY+G S G+ + F Y D +P TPI + +
Sbjct: 196 RHALKTILREEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPICM-F 254
Query: 418 AIAQTVTTVAGIISYPFDTVRRRMMMQSGRARAIS 522
A +S+PFDT+R++M + +G+ +IS
Sbjct: 255 VNGCVAGAFAHTLSHPFDTIRKKMQL-TGKEVSIS 288
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 250 KLISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA-IA 426
+ + ++K +G+ ++G GVS + Y A + ++ L DP N + S + +A
Sbjct: 99 RTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGSMLA 158
Query: 427 QTVTTVAGIIS-YPFDTVRRRMMMQ 498
T +T+ +++ YP + ++ R+ +Q
Sbjct: 159 GTSSTLIAMVTVYPCEVIKTRLTVQ 183
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +1
Query: 259 SKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGM-LPDPKNTP----IVISWAI 423
S I++ +G+ YRG S+ GII Y Y+T + L KN +++ A
Sbjct: 274 SVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADPGVLVLLAC 333
Query: 424 AQTVTTVAGIISYPFDTVRRRMMMQS 501
+T + SYP VR R+ Q+
Sbjct: 334 GTASSTCGQLASYPLSLVRTRLQAQA 359
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 265 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML--PDPKNTPIVISWAIAQTVT 438
+FK++G+ +Y+G + + + + G YD + M D +N I+ A + T
Sbjct: 76 LFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKILKKIAASITTG 135
Query: 439 TVAGIISYPFDTVRRRMMMQSGR 507
+A ++ P + V+ R +GR
Sbjct: 136 IMAVSVAQPTEVVKIRFQADAGR 158
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.9 bits (74), Expect = 0.11
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Frame = +1
Query: 256 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTV 435
+ +I +G+ GLY+G S+ I + YD + D ++ + +
Sbjct: 76 LRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQSVYDIMKLRALDSAFAANSGTFLVCGAI 135
Query: 436 T-TVAGIISYPFDTVRRRMMMQSGRARAISCTRTPSTAGLTLPRPKGTR---PSLKGAFF 603
+A + +P D VRR+M + GR+ +I T+T +A L + G R L ++
Sbjct: 136 AGMIAQTVVHPLDVVRRQMQVDRGRSGSI--TQTSLSALKILWKQGGPRRIYAGLTASYL 193
Query: 604 KVL 612
KV+
Sbjct: 194 KVM 196
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 271 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAG 450
K++G+ L++G G ++ G+ RA YF Y + ML I T + +A
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDMLNKSGALGKADGSLIHMTSSAIAA 845
Query: 451 IISY----PFDTVRRRMMMQS-GRARA 516
I++ P ++ R+ +++ G RA
Sbjct: 846 FINHTVTNPLWFIKTRLQLENQGGTRA 872
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +1
Query: 256 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKN------TPIVISW 417
+ K+F S+GL G +RG ++ I A YFG + +L PK +PI + +
Sbjct: 304 LKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELL-TPKGEHVDNLSPIRLFF 362
Query: 418 AIAQTVTTVAGIISYPFDTVR 480
+ T++ I++YP D V+
Sbjct: 363 S-GGIAGTLSWILTYPVDMVK 382
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 262 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 441
+I K + ++GLY+G + G+ + A FG L IS AIA V +
Sbjct: 200 QIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAISGAIAGGVQS 259
Query: 442 VAGIISYPFDTVRRRMMMQ 498
I+ P + + R+ +Q
Sbjct: 260 ---IVCCPMELAKTRVQVQ 275
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 510 KSDILYKNTIHCWANIAKTEGNSAFFKG 593
++D YK+T+H +++I K EG +KG
Sbjct: 195 RADFAYKSTLHAFSSIVKLEGFRGLYKG 222
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 391 KNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRARAISCTRTPSTAGLTLPRPK 570
+ P+ V+ +YP D VRRRM M+ RA ++ A ++ + +
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKG--IRADFAYKSTLHAFSSIVKLE 214
Query: 571 GTRPSLKGAFFKVLR 615
G R KG + +L+
Sbjct: 215 GFRGLYKGMWPNILK 229
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 30.7 bits (66), Expect = 1.0
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Frame = +1
Query: 256 ISKIFKSDG-LIGLYRGFG------VSVQGIIIYR-ASYFGFYDTARGMLP--DPKNTPI 405
+ +IF ++G ++ LYRGF + GI Y S+ F+ +G+L P+
Sbjct: 43 VKQIFMTEGGMVALYRGFTPTSLSMIPAVGIGFYAFESFKDFFVAMKGVLTRIHPETGET 102
Query: 406 VISWAIAQTVTTVAGIIS----YPFDTVRRRMMM 495
V++ +AG S YP D VRRRM +
Sbjct: 103 VLTAPGGLLCGALAGATSQTLAYPLDVVRRRMQL 136
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 265 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTV 444
I ++ G+ G Y+G ++ I +FGFY+ + +L T +S T +
Sbjct: 254 IAQTYGIRGCYQGLSATLVRNIPANGFFFGFYEFTKNLLTPEGGTVNDVSPLGLLTSGAM 313
Query: 445 AG----IISYPFDTVRRRMM 492
G ++YP D V+ MM
Sbjct: 314 GGFFYWFLTYPTDLVKSSMM 333
>SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 215
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 248 RDRRIHAGHRPYRHRR--RDGYVRSRGGTRSTERWLRRHHRRPDYQRSNA 105
RDRR + R R R RD RSR +R R R HR+ D R ++
Sbjct: 24 RDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 73
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 248 RDRRIHAGHRPYRHRR--RDGYVRSRGGTRSTERWLRRHHRRPDYQRSNA 105
RDRR + R R R RD RSR +R R R HR+ D R ++
Sbjct: 1594 RDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 1643
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +1
Query: 244 SRKLISKIFKSDGLIGLYRGFGVSVQ----GIIIYRASYFGFYDTARGMLPDPKNTPIVI 411
+R LI + F G G Y+G+ S+ I+ ASY GFY G L +++
Sbjct: 148 ARILIRETFHQHGPGGFYKGYFASLMTYAPSSAIWWASY-GFYTGVIGNLSADGTHRLLV 206
Query: 412 SWAIAQTVTTVAGIISYPFDTVRRRM 489
+ A ++ P D +R R+
Sbjct: 207 LGSSGVLAGVTAATLTNPLDVIRTRL 232
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 259 SKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLP-----DPKNTPI--VISW 417
+ +FK +G+ YR + + I ++ +F Y+ AR L DPK I +
Sbjct: 40 TSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKTHVIAGATAG 99
Query: 418 AIAQTVTTVAGIISYPFDTVRRRMM 492
A+A +TT + +T R ++
Sbjct: 100 AVASAITTPLDVAKTLLNTQERSVV 124
>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
Length = 396
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 296 YRPIRPSDLKILLMSFRDRRIHAGHRPYRHRRRDGYVRSR-GGTRSTERWLRRHHRRPDY 120
Y P++P+D +++ R++R R R R RD +R R + +R R RP
Sbjct: 107 YDPLKPNDYEVVKEKIREKR-ERDRREERDRERDVRMRERFEREQEKDRERDRDKERPRE 165
Query: 119 QRSNAR 102
+R R
Sbjct: 166 RRREGR 171
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 209 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 87
+ RD RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -3
Query: 209 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQRRRGTPACTCP 51
HR+ + RSR R R+ R R +SSC+RRR P
Sbjct: 275 HRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSP 327
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 119 QRSNARTASSCQRRRGTPACTCP 51
Q + R S CQRRRG C CP
Sbjct: 934 QLVSCRFYSKCQRRRGGAQCVCP 956
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 246 RPENSRWPSPLPTSAARRVRAKSRGYTK 163
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +1
Query: 316 VQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT-----VAGIISYPFDTVR 480
+Q +++ + + G Y R DP T + + V V +I YPF+TV
Sbjct: 240 IQHLVLIKMGHTGLYGDTRDCNEDPPPTSDMTQSYYPELVANFMAFVVPDLILYPFETVL 299
Query: 481 RRMMMQSGR 507
R+ +Q R
Sbjct: 300 HRLYIQGTR 308
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 265 IFKSDGLIGLYRGFGVSVQGIIIY 336
I++ +G+ G YRGFG + ++Y
Sbjct: 337 IYQQEGIFGFYRGFGALLIQCVVY 360
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -3
Query: 251 FRDRRIHAGHRPYRHRRRDGYVRSRG-----GTRSTERWLRRHHRRPDYQRSNARTASSC 87
+RD+R H P HRR RSR +RS R R P ++ +R+ S
Sbjct: 206 YRDQR-RRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRS 264
Query: 86 QRRR 75
RRR
Sbjct: 265 PRRR 268
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 239 RIHAGHRPYRHRRRDGYVRSRGGTRSTERWLRRHHRRP 126
R H+G +PYR R D Y R RS E R H +P
Sbjct: 479 RTHSGLKPYRCRLCDKYFAQRSLVRSHE---RTHQEKP 513
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -3
Query: 248 RDRRIHAGHRPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQRRR 75
R R+ H +H+RR R R +R R+ H+R +QR + Q+++
Sbjct: 160 RHRQKHQRRNRQKHQRRQRQEHQRRHRRQHQRRHRQKHQRRQHQRRERQKQQQRQKQQ 217
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 200 RDGYVRSRGGTRSTERWLRRHHRRPDY-QRSNARTASSCQR 81
+DG V +RG TR + R H RR + R + R +S+ R
Sbjct: 591 QDGQVTTRGHTRRSSNTTRSHTRRSSHTTRGHTRRSSNTTR 631
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 206 RRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTASSCQRRRGTP 66
R+ + R +GG R+T+ ++H R +PD +R+ R R+GTP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP-----RKGTP 907
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 259 SKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 372
++I++ +G+ YRG+ ++ GI+ Y F Y+T +
Sbjct: 33 TRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCK 70
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -3
Query: 311 TPKPLYRPIRPSDLKILLMSFRDRRIHAGHRPYRHRRRDGYVRSRGGTRSTERWLRRHHR 132
TP+P RP + ++ DRR + R +H +R Y SR ++ + R
Sbjct: 1415 TPEP-----RPESRESRVIVHTDRRPDSRERVIQHDQRAKYQESRVESQERQTMRDTRPR 1469
Query: 131 RPDYQRSNAR--TASSCQRRRGTP 66
PD R + R + +RR G P
Sbjct: 1470 HPDELRPDIRHDIRVAQERREGRP 1493
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 510 KSDILYKNTIHCWANIAKTEGNSAFFKGSLLQ 605
+++ +YKN+I C+ + + EG ++G L Q
Sbjct: 949 EAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQ 980
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 262 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 387
K+ +++G IGLYRG + G+ +A D RG+ D
Sbjct: 963 KVVRNEGPIGLYRGLLPQLLGVSPEKAIKLTTNDFVRGIFSD 1004
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 332 MMIPCTDTPKPLYRPIRPSDLKILL--MSFRDRRIHA 228
+++PC P LYR +RP L+I + + F + RI A
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQVFFTNSRIGA 623
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 312 HTETSVQTDQTVGLEDLADE--FPRPENSRWPSPLPTSAARRVRAKSRGYTKHREV 151
H S T+Q GL DLAD+ +P + + P + + VRA T H EV
Sbjct: 223 HPVNSDPTEQAPGLPDLADDSSASKPRRRKRKNSTPKTTRKPVRAME---TPHAEV 275
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 234 NSPVSETHQQDLQVR--RSDRSVQRFRCVRARYH 329
N+ +SE H+ D QVR ++DRS ++ ++R++
Sbjct: 1167 NAALSEIHEYDKQVRQLKADRSNSQYEMEKSRFY 1200
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 265 IFKSDGLI-GLYRGFGVSVQGIIIYRASYFGFYDTARGML 381
++K DG+ GLYRG ++ + A FG Y+ + L
Sbjct: 222 VYKDDGIRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFL 261
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 465 GIGDDTGDCGYGLS-DGPADYNG 400
G GD +G CGYG S G DY G
Sbjct: 179 GGGDYSGGCGYGSSYGGGGDYGG 201
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +1
Query: 271 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR----GMLPDPKNTPIVISWAIAQTVT 438
K DG+ GL RG+ + G + FGFY+ + ML + + S +A + +
Sbjct: 102 KEDGVRGLARGWAPTFIGYSMQGLGKFGFYEVFKIMYGNMLGEEYSYLYRTSLYLAASAS 161
Query: 439 T--VAGIISYPFDTVRRRMMMQSGRA 510
A I P + V+ R+ Q G A
Sbjct: 162 AEFFADIALAPMEAVKVRIQTQPGWA 187
>SB_4276| Best HMM Match : DUF288 (HMM E-Value=1e-04)
Length = 687
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 376 MLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRARAISCTRTPS 540
M P P+ + + W + +TT I+YP D V++ M + + T+TPS
Sbjct: 152 MKPKPEKSEMNDKWVV---ITT----INYPTDDVKKLAKMDGWKVVVVGDTKTPS 199
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = -3
Query: 248 RDR-RIHAGHRPYRHRRRDGYVRSRG--------GTRSTERWLRRHHRRPDYQRS 111
RDR R H P H R Y RS+ GT R + +RR D+ RS
Sbjct: 1323 RDRDRYHGSEHPRSHERSSDYSRSKDLHPRSYDRGTDHLPRSYEKSYRREDHHRS 1377
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,521
Number of Sequences: 59808
Number of extensions: 365016
Number of successful extensions: 1520
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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