Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0908
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   178   4e-47
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   178   4e-47
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  178 bits (433), Expect = 4e-47
 Identities = 83/123 (67%), Positives = 98/123 (79%)
 Frame = +1

Query: 256 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTV 435
           ++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222

Query: 436 TTVAGIISYPFDTVRRRMMMQSGRARAISCTRTPSTAGLTLPRPKGTRPSLKGAFFKVLR 615
           TTVAGI+SYPFDTVRRRMMMQSGRA++    ++      T+ + +G     KGAF  +LR
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282

Query: 616 STG 624
            TG
Sbjct: 283 GTG 285



 Score =  130 bits (314), Expect = 1e-32
 Identities = 62/79 (78%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   ANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLD 181
           ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLD
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137

Query: 182 FARTRLAADVGKGDGQREF 238
           FARTRLAADVGK  G+REF
Sbjct: 138 FARTRLAADVGKAGGEREF 156



 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 525 YKNTIHCWANIAKTEGNSAFFKGSL 599
           YK  I C+  I K +G  ++++G+L
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNL 77


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  178 bits (433), Expect = 4e-47
 Identities = 83/123 (67%), Positives = 98/123 (79%)
 Frame = +1

Query: 256 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTV 435
           ++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222

Query: 436 TTVAGIISYPFDTVRRRMMMQSGRARAISCTRTPSTAGLTLPRPKGTRPSLKGAFFKVLR 615
           TTVAGI+SYPFDTVRRRMMMQSGRA++    ++      T+ + +G     KGAF  +LR
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282

Query: 616 STG 624
            TG
Sbjct: 283 GTG 285



 Score =  130 bits (314), Expect = 1e-32
 Identities = 62/79 (78%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   ANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLD 181
           ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLD
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137

Query: 182 FARTRLAADVGKGDGQREF 238
           FARTRLAADVGK  G+REF
Sbjct: 138 FARTRLAADVGKAGGEREF 156



 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 525 YKNTIHCWANIAKTEGNSAFFKGSL 599
           YK  I C+  I K +G  ++++G+L
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNL 77


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 248 RDRRIHAGHRPY 213
           R  R+H G RPY
Sbjct: 55  RHLRVHTGERPY 66


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 248 RDRRIHAGHRPYR 210
           R  RIH G RP++
Sbjct: 165 RHMRIHTGERPHK 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,550
Number of Sequences: 438
Number of extensions: 3000
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)