Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0906
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    56   3e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    47   1e-06
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    40   2e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    39   4e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    38   8e-04
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    37   0.001
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    33   0.032
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   4.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.4  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   8.4  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +3

Query: 24  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 203
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 204 XXASEYNINSMPTFVLVR 257
             A+E  +++MP+F L +
Sbjct: 62  EIAAEAGVHAMPSFFLYK 79


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = +3

Query: 24  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 203
           ++   D  TR++   DK+ V+DF A WCGPCK + P L+++ +E                
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78

Query: 204 XXASEYNINSMPTFVLVR 257
             A +  + ++PT VL R
Sbjct: 79  DIAQKNGVYALPTMVLFR 96


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 39/85 (45%)
 Frame = +3

Query: 12  MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 191
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 192 XXXXXXASEYNINSMPTFVLVRMAR 266
                 A  +++N++P FVL+  A+
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAK 84


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +3

Query: 18  IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXX 191
           + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A  E            
Sbjct: 23  VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81

Query: 192 XXXXXXASEYNINSMPTFV 248
                 A +Y+I   PT +
Sbjct: 82  DTHSDVADKYHITGFPTLI 100



 Score = 30.3 bits (65), Expect = 0.17
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 72  KLVVIDFMATWCGPCKMIGPKLDEI 146
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPT 242
           DK++++ F A WCG CK + P+ +  A E+                   SEY+I   PT
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPT 97



 Score = 34.3 bits (75), Expect = 0.010
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 72  KLVVIDFMATWCGPCKMIGPKLDEIAAE 155
           K V+++F A WCG CK + P  +++A E
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEE 401


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 78  VVIDFMATWCGPCKMIGPKLDEIAAE-MXXXXXXXXXXXXXXXXXASEYNINSMPTFV 248
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFV
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFV 79


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 30  DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 209
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 210 A--SEYNINSMPTFVLV 254
           A  S+Y +   PT  LV
Sbjct: 95  AVCSQYQVQGFPTIKLV 111


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 464 KLISSNSLQTLKTFFIHLLKTY 399
           KL+SSN+LQ +  F+  ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 30  DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA 152
           + D +  RL EAG  +     +A  CGPC  +  + D+IA+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIAS 466


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 228 NSMPTFVLVRMARNWTNSLALTSTNSKQLSLNTSK*RLKLYA 353
           N  P    +  A + +   A+T+ N   LSL T + R  LY+
Sbjct: 373 NGKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYS 414


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 68 ACFRQPCLQVVGIFD 24
          A F+QPCL+ +G FD
Sbjct: 34 ATFKQPCLEHMGKFD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,070
Number of Sequences: 5004
Number of extensions: 31313
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)