Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0905
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   1.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.4  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.5  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   7.3  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.6  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.6  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.6  

>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 654 RPKIRSIN*KKTWGTLSQGPLTI*WNNQLINVEIHPQSILCVN**LRIIYEC 499
           +P I+    KK  G +++G   +  NN +  +E  P+ ILC N   + I EC
Sbjct: 19  QPSIKEKEAKKLQG-ITKGKAKVTGNNPVDPIEEFPEGILCENLKKQNITEC 69


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 390 RCEPYNYHNTWHQDCELP 337
           R   +N+ N+W  DCELP
Sbjct: 210 RYADWNFTNSWDPDCELP 227


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 350 IVNCLNVFQQLPLFNFLTIHKTSSNIQGIHKRN 252
           I++CL +F +     FL IH+ S   +  H+ N
Sbjct: 174 IIHCLQLFFKWQYAQFLFIHRESFLFEYFHRSN 206


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 375 NYHNTWHQDCELPECIPTTPPLQFPNNSQNEL 280
           N H+     C+  EC+    P+QF  N   EL
Sbjct: 523 NGHDCGVFACKTAECVSRNVPVQFSQNDMPEL 554


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -3

Query: 78  RIMSMDK---IPSDLLLIHHH 25
           RI+ MDK   + SDL++ HHH
Sbjct: 179 RILDMDKFLLVQSDLIIPHHH 199


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169  IYISL-ESIFPMYPAINYFCSCVVSHYVVLRL*IPCMLELVL*IVRKLK 312
            +Y SL ESI P+Y  + +F   VV +  +  L +    E  + +V + K
Sbjct: 2811 VYRSLNESIVPLYSELEFFMKSVVLNQYIFELAMRLSKESNIAVVEEAK 2859


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 11  ALVAVWWWINSRSEGILSIDII 76
           AL  +++WI S S G+L I II
Sbjct: 38  ALTPLFYWIRSTSVGLLLITII 59


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 432 PPPIGRVNIRAHLVRCEPYNYHNTWHQDCELPECIPTTPPLQFPNNSQNE 283
           PPP+ R++I    V  EP           E PE IP+ PPL  P+N +++
Sbjct: 514 PPPVPRLSITRSQVSREP-----------EKPEEIPSVPPL--PSNFKDK 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,561
Number of Sequences: 5004
Number of extensions: 61124
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)