Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0905
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 

>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 372  YHNTWHQDCELPECIPTTPPLQFPNNSQNEL*HTGNSQAQYHVM*HYTTT 223
            +H T H     P  +P+    + P+++Q++  HT +  A +H   H+TT+
Sbjct: 1115 HHTTSHSTITQPVTVPSH---KMPSHNQSQYHHTTSHSAYHHTKCHHTTS 1161


>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 327 PTTPPLQFPNNSQNEL*HTGNSQAQYHVM*HYTTTEVIYCWIHRKYRFKR 178
           PTTP L  PNN+   +    + Q   H   H TTT       H+ YR++R
Sbjct: 111 PTTPTLPSPNNTNTTITQQHHDQPHLHYH-HLTTTSQ-----HQAYRYRR 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,541,736
Number of Sequences: 59808
Number of extensions: 433863
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)