Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0902
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 29 0.53
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 27 1.2
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 2.9
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 2.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 3.8
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c... 26 3.8
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 3.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 5.0
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 25 5.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 8.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 8.7
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.53
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 352 LVLKTFCTCFLNCSSVSSTC 293
LVLK +CT F+ + SSTC
Sbjct: 224 LVLKEYCTLFITSKAYSSTC 243
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 9 RLLILNKILLFTDFEWCDR*RTHNGEQW 92
R + L K+LL TD WC+ +H G Q+
Sbjct: 223 RAIPLEKMLLETDAPWCEVRPSHAGHQF 250
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 355 MLVLKTFCTCFLNCSSVSSTCFLKLMALR 269
+ + TFC CFL+C + S LK + R
Sbjct: 7 LFIFATFCPCFLSCCAFMSHWKLKDFSFR 35
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 67 KELIMENSGGNMCRCCASEGV 129
+EL+ SG N+C C++ GV
Sbjct: 11 RELVQSVSGNNLCADCSTRGV 31
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 67 YLSHHSKSVNNSILFKINRRY 5
Y+SHH +S+ S++ + NR Y
Sbjct: 357 YMSHHKESIIKSVIREANRVY 377
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 192 QHVSVYLFFAHPMVSGI 142
+ VS+ + FAHP VSGI
Sbjct: 1380 EKVSISMIFAHPSVSGI 1396
>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 175 PLLRPSNGKWYSSPYTHLQRHNIDTYYRH 89
P + NG WY++PY +H + Y H
Sbjct: 84 PFTKRENGLWYANPY--YMQHGPNGNYHH 110
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 215 NCTLKQSFNMSPYTSSSPIQW*VVFKSLYTPSEAQHRHILP 93
NCTLK+ + S I+ V +S+YT ++A+ + + P
Sbjct: 448 NCTLKEWNQLYSEIPSRLIRCEVEDRSIYTTTDAEQKLVTP 488
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 236 SELSGTLNCTLKQSFNMSPYTSS 168
SE S TLN LK F+M+ + +S
Sbjct: 1072 SETSKTLNMALKSEFDMTDFNNS 1094
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 185 SPYTSSSPIQW*VVFKSLYTP 123
SPY S+SP+ W S+Y P
Sbjct: 110 SPYGSASPVTWNAETHSVYGP 130
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 263 GYATSHMPPSELSGTLNC 210
G ATS+ PP + T+NC
Sbjct: 196 GAATSNCPPKYVRSTINC 213
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 8.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -2
Query: 209 TLKQSFNMSPYTSSSPIQW*VVFKSLYTPSEAQHRHILPPLFSIMSSLSI---TPFKIG 42
T+ Q +P SSPIQW ++ K++ +HRH + + S I +PFK+G
Sbjct: 321 TVNQYLQSNP---SSPIQWSLISKNM----RNRHRHHCRWKYYTLISRDIHNSSPFKLG 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,713
Number of Sequences: 5004
Number of extensions: 37407
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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