Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0902
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376...    27   6.6  
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21...    27   6.6  
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    27   8.8  
07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561...    27   8.8  
06_03_0101 + 16659185-16660546                                         27   8.8  
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222...    27   8.8  
01_05_0657 + 24034198-24036306                                         27   8.8  

>11_01_0487 -
           3763233-3763733,3763827-3764279,3765270-3765392,
           3765822-3766122,3766283-3766644,3767117-3767713,
           3768323-3769447
          Length = 1153

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 136 DLNT-TYHWMGEEEVYGDMLKDCFNVQLSVPESSDGG 243
           DLN+ T   +  EE+   +++ CF + L +PE ++ G
Sbjct: 441 DLNSITSKSLFREELVASLVESCFQLSLPLPEQNNSG 477


>04_01_0012 -
           210670-210759,210939-211008,211138-211235,211318-211427,
           211533-211683,212247-212391,212483-212749,212819-212957,
           213036-213270
          Length = 434

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 476 HRLGDVLRLNWNLVEFWFRQSVVCDVGICTV 384
           H + D L++N + VE+W  +++ C +  C V
Sbjct: 342 HAIIDALKINDDEVEYWIVKAISCKILDCKV 372


>07_03_0329 +
           16840051-16840917,16840999-16841342,16841444-16841574,
           16841671-16841792,16841877-16841983,16842104-16842236,
           16842342-16842458,16842560-16842667,16842716-16842742,
           16842759-16842830,16843462-16843584,16843671-16843833,
           16844140-16844264,16844355-16844489,16844574-16844677,
           16844772-16844834,16844930-16844993,16845186-16845318,
           16845414-16845487,16845603-16845697,16845799-16845830,
           16846201-16846355
          Length = 1097

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 64  DKELIMENSGGNMCRCCASEGVYKDLNTTY 153
           D + I E   G + +CC ++ VYK+ N  Y
Sbjct: 773 DVKRICETEIGVLSQCCRAKQVYKERNVQY 802


>07_01_0737 +
           5614552-5616196,5617425-5617600,5617811-5617930,
           5618589-5618669,5618769-5618804,5618872-5618922,
           5618923-5618988,5620755-5620976,5622147-5622308,
           5622321-5622491
          Length = 909

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 180 VYLFFAHPMVSGIQVLIHTFRGTTSTHITATVLHY 76
           VY+FFAH   + + +L+H  +  TS  I A + HY
Sbjct: 755 VYIFFAHGYSAFLFILVHPPQTVTSDWI-AALPHY 788


>06_03_0101 + 16659185-16660546
          Length = 453

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 97  NMCRCCASEGVYKDLNTT 150
           N  RCC   G++K LNT+
Sbjct: 433 NFLRCCLPTGIFKHLNTS 450


>02_05_1042 +
           33718988-33720112,33720709-33721305,33721862-33722223,
           33722383-33722683,33723149-33723271,33723535-33723990,
           33724102-33724602
          Length = 1154

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 136 DLNT-TYHWMGEEEVYGDMLKDCFNVQLSVPESSDGG 243
           DLN+ T   +  EE+   +++ CF + L +PE  + G
Sbjct: 441 DLNSITSKSLFREELVASLVESCFQLSLPLPEQKNSG 477


>01_05_0657 + 24034198-24036306
          Length = 702

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 234 RALRHTQLYVETIFQHVSVYLFFAHPMVSGIQVLIHTFR 118
           R L H Q YVE  F+ + V L F H        +I+ +R
Sbjct: 279 RGLLHGQKYVERAFRVIEVELAFVHDYFYTKYFVIYMYR 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,793
Number of Sequences: 37544
Number of extensions: 234681
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)