Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0902
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_50116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)         27   9.0  
SB_45892| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 385 TVQMPTSQTTDCRNQNSTRFQLRRSTSPRR*QSGMRLSLRKP 510
           T   PTS+T   RNQ  T    RR  + RR    ++L + KP
Sbjct: 144 TTTTPTSRTPTSRNQRETPRSSRRGQNARR--KEIKLQVNKP 183


>SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 169 LRPSNGKWYSSPYTHLQRHNIDTYYRHCSP 80
           +R S+GKWY  P+T+ Q  +   +   C P
Sbjct: 142 IRHSSGKWYYLPFTNEQHSDELVFTDFCQP 171


>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 488 IPDCHRLGDVLRLNWNLVEFWFR 420
           IPD +  GDV   +W   +FWF+
Sbjct: 236 IPDVYAAGDVCCASWEPSKFWFQ 258


>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 49  LNGVIDKELIMENSGGNMCRCCASEGVYKDLNTTYHWMGEEEVYGD 186
           L+ VIDKE+I+EN G ++    A E + + L      + + + YGD
Sbjct: 7   LSNVIDKEMILENPGKDISSGDAWEDLEEPLIMDETEVFDPDNYGD 52


>SB_50116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 491 LIPDCHRLGDVLRLNWNLVEFWFRQSVVCDVGIC 390
           L+ + + +  V  + WN+   W+R+ + C V  C
Sbjct: 9   LVTNFNSVSSVTLITWNIRGAWYRKRISCTVEPC 42


>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 CASEGVYKDLNTTYHWMGEEE 174
           C++   Y D++  YHW+ ++E
Sbjct: 89  CSNAHAYSDVDVLYHWVSQKE 109


>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 CASEGVYKDLNTTYHWMGEEE 174
           C++   Y D++  YHW+ ++E
Sbjct: 89  CSNAHAYSDVDVLYHWVSQKE 109


>SB_45892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 313 SSVSSTCFLKLMALRSWVMQPRICHRQ-SSPAHSTVR*NNLSTCLRIPLLRPSNGKWYSS 137
           S++S + +L+   LR WV QP  CHR             ++S+ LR  +LR     W + 
Sbjct: 4   STISMSSYLRKRMLR-WVNQPYPCHRTWKDNVEMDESTISMSSYLRKRMLR-----WVNQ 57

Query: 136 PY 131
           PY
Sbjct: 58  PY 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,171
Number of Sequences: 59808
Number of extensions: 278902
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)