Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0902
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.79 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = -1

Query: 243 ATVRALRHTQLYVETIFQHVSVYLFFAHPMV-----SGIQVLIHTFRGTTSTHITATVLH 79
           A  R  +H  +    +F+     + F   M+     + + V++    G   TH    V  
Sbjct: 193 AMTREEKHLPIGASVLFEIFPFCIVFGSDMIVRSIGNSLMVILPDLVGKKITHFFDLVRP 252

Query: 78  YEFFIYHTIQNR*IIVFCLKSIDAI 4
              F +H+I NR   +F L +++ I
Sbjct: 253 LIAFKFHSILNRTNNIFELVTVEPI 277


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 84  EQWR*YVSMLCL*RCV*GLEYHLPLDXXXXXXXXHVERLFQ 206
           E W   +++    +C+ G +Y LP+         ++ER+ Q
Sbjct: 463 EPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 493 ISSPTVTVSATCSVLIGT 440
           ++S   T+ A C+V+IGT
Sbjct: 427 LASGDYTIPAGCTVVIGT 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,566
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)