Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0902
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    33   0.084
At5g32161.1 68418.m03792 hypothetical protein                          30   1.0  
At1g31400.1 68414.m03845 meprin and TRAF homology domain-contain...    29   2.4  
At5g45460.1 68418.m05585 expressed protein                             28   4.2  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    27   5.5  
At5g63740.1 68418.m08000 zinc finger protein-related                   27   9.7  
At5g61200.1 68418.m07677 hypothetical protein                          27   9.7  
At5g07030.1 68418.m00796 aspartyl protease family protein contai...    27   9.7  
At3g44620.1 68416.m04797 low molecular weight phosphotyrosine pr...    27   9.7  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    27   9.7  
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ...    27   9.7  

>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 397 PTSQTTDCRNQNSTRFQLRRSTSPRR*QSGMRLSL 501
           P S T+ C  +N++R + RRS+SPR  Q   R  L
Sbjct: 252 PASDTSCCTTENNSRIESRRSSSPRALQPSCRTRL 286


>At5g32161.1 68418.m03792 hypothetical protein 
          Length = 193

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -3

Query: 226 PAHSTVR*NNLSTCLRIPLLRPSNGKWYSSPYTHLQRHNIDTYYRHCSPL*VLYLSHHSK 47
           P HST R +NLS+     LL P     +++P  H +   +  Y    S   ++   HH +
Sbjct: 64  PVHSTTRSSNLSSGHSTTLLDPLVEYRFATPPDHTRPFTLPRYSTPWSS--IITHHHHHQ 121

Query: 46  SVNNSI 29
           S  +SI
Sbjct: 122 STGHSI 127


>At1g31400.1 68414.m03845 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 278

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 118 SEGVYKDL----NTTYHWMGEEEVYGDMLKDCFNVQLSVPESSD 237
           S  +Y D+    +T +H +   + YGD +  C ++ L VP+  D
Sbjct: 21  SHAIYFDIFVVGDTKWHLLAYPKGYGDSINKCLSLFLGVPDPDD 64


>At5g45460.1 68418.m05585 expressed protein
          Length = 703

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 204 ETIFQHVSVYLFFAHPMVSGIQVLIHTFRGTTSTHITATVLHYEFFIYHTIQNR 43
           E   + + + L F +  +     ++HT  GT S  + +  L   F I+H I N+
Sbjct: 279 EEALRIIEIELGFLYDALFTKNAVLHTVLGTVSRVVASGSLVAAFIIFHKISNK 332


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 CASEGVYKDLNTTYHWMG-EEEVYGDMLKDCFNVQLSVP 225
           C S GVY  +   Y     +EE+  D+ KDC+     VP
Sbjct: 311 CDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVP 349


>At5g63740.1 68418.m08000 zinc finger protein-related 
          Length = 226

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 58  VIDKELIMENSGGNMCRCCASE--GVYKDLNTTYHWMGEEEVYGDMLKD 198
           VID  L++ NS   +CR    E   VY D N      G+ +  GD  +D
Sbjct: 26  VIDSNLVLSNSTCGICRTAEDEYIKVYDDHNNDGEGDGDGDGDGDEDED 74


>At5g61200.1 68418.m07677 hypothetical protein
          Length = 389

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 100 MCRCCASEGVYKDLNTTYHWMGEEEVYGDMLKDCFN 207
           M RC ASE   KDL  ++    E E    +  DCF+
Sbjct: 244 MERCVASERNIKDLRQSFRGRLESESEAPVNPDCFH 279


>At5g07030.1 68418.m00796 aspartyl protease family protein contains
           Pfam profile:PF00026 eukaryotic aspartyl protease
          Length = 439

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 185 SPYTSSSPIQW*VVFKSLYTPSEAQHRHILPPLFSIMSSLSITPFKIGK 39
           SP+ SSSP+ W    + L T ++ Q R  L  L S+++  S+ P   G+
Sbjct: 47  SPFKSSSPLSW--EARVLQTLAQDQAR--LQYLSSLVAGRSVVPIASGR 91


>At3g44620.1 68416.m04797 low molecular weight phosphotyrosine
           protein phosphatase family protein contains Pfam
           profile: PF01451 low molecular weight phosphotyrosine
           protein phosphatase
          Length = 177

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 94  GNMCRCCASEGVYKDL 141
           GN+CR  A+EGV++D+
Sbjct: 23  GNICRSPAAEGVFRDI 38


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1338

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 298 TCFLKLMALRSWVMQPRICHR 236
           TC  KL+ +R W + P +C +
Sbjct: 43  TCRHKLLGMRDWPLDPLVCQK 63


>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 656

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 388 VQMPTSQTTDCRNQNSTRFQLRRSTSPRR 474
           VQ PT+ TT+     STR Q + S  P +
Sbjct: 144 VQSPTTTTTNATTSKSTRKQQQHSKDPNQ 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,587
Number of Sequences: 28952
Number of extensions: 191386
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)