Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0898
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    29   0.34 
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    28   0.77 
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    28   1.0  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   1.8  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   4.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   5.5  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   5.5  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   9.5  

>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 136 GERSPTLSETATTARASSVNENGGTLNKLHNSHYD 240
           GERS  L E A +A AS+     G+L +L    YD
Sbjct: 46  GERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYD 80


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -2

Query: 350 YCWHGAMSRERCSTLASSASSVQCLCVARYGRLF-AIGS*WLLWSL--FRVPPFSLTLEA 180
           YCW G    E C  L +S S+ +   + RY  L  A    W    L    VPP +L ++ 
Sbjct: 102 YCWSGGKRMESC--LDTSLSTYERDYLTRYSELLAAYKGAWSELDLTGSLVPPKNLFIDV 159

Query: 179 RAVVAVSD 156
           R +  V D
Sbjct: 160 RVLKDVGD 167


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 ATTILSRTSVHSAQHTDIEPKMPNSQALNNALGTLPR 340
           +TTI++ +S +S Q  D+    P  Q L    G LP+
Sbjct: 10  STTIIAMSSSNSEQKVDVAKLSPEEQKLFRLYGRLPQ 46


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +2

Query: 128 KIMVREVQRYRKQRRQLEPRASMKTGVL*TNSTTATTILS------RTSVHSAQHTDIEP 289
           K+  +E +  R+ RRQ     S+K  +   ++T   TIL+          H+A+  +I  
Sbjct: 782 KVSAKERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKKKHAAREMEISS 841

Query: 290 KMPNSQALN 316
           ++P++ + N
Sbjct: 842 QIPSNDSSN 850


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 166 LFPITLDFSHHYLWINIERLCILNA*FVWTE 74
           ++ +TLD    Y W+  + +  L+A  +W++
Sbjct: 88  VYSLTLDTGSPYTWVTAKNITALSASEIWSD 118


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 151 TLSETATTARASSVNENGGTLNKL 222
           TLSE++TT+ +SS +EN  T + L
Sbjct: 363 TLSESSTTSISSSPSENSDTSDDL 386


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 SPTLSETATTARASSVNENGGTLNKLHNS 231
           SP+L E+   +   + N+N G +   HNS
Sbjct: 171 SPSLKESDFESEEKATNDNNGLIETNHNS 199


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 47  VDDADLQLDFSPNKSRVQYTQTFNIYPKIMVREVQRYRKQRRQLE 181
           +DDADL    SP  SR ++   +   P + + ++Q +      +E
Sbjct: 402 IDDADLVFHSSPLLSRSRFICCYCTKPFLSISKLQEHESSCSHVE 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,370
Number of Sequences: 5004
Number of extensions: 44528
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)