Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0898
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-3|AAK68172.1|  408|Caenorhabditis elegans Prion-like-(q...    31   0.41 
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical...    29   2.9  
U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone...    28   3.8  
U46670-2|AAC48174.4|  440|Caenorhabditis elegans Nuclear hormone...    28   3.8  
U46670-1|AAP46277.1|  445|Caenorhabditis elegans Nuclear hormone...    28   3.8  
AY204166-1|AAO39170.1|  436|Caenorhabditis elegans nuclear recep...    28   3.8  
AY204165-1|AAO39169.1|  445|Caenorhabditis elegans nuclear recep...    28   3.8  
AY204164-1|AAO39168.1|  440|Caenorhabditis elegans nuclear recep...    28   3.8  
AY204163-1|AAO39167.1|  440|Caenorhabditis elegans nuclear recep...    28   3.8  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC006607-3|AAK68172.1|  408|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 10
           protein.
          Length = 408

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 76  QSKQITRSIYTNVQYLSKDNGERSPTLSETATTARASSVNENGGTLNKLHNSHYDP 243
           Q +Q+T + + N Q +S +NG    T+      + A + N N   +N   N +Y P
Sbjct: 146 QQQQLTTNAFQNSQPMSLNNGN---TMKAYGRRSTAQNFNNNNNNMNNNQNHNYAP 198


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
           protein T01C4.1 protein.
          Length = 1484

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 386 LMWRLIIHHRHCYCWHGAMSRERCSTLASSAS-SVQ 282
           L++ L+   R+C  WH   S + C  +AS AS SVQ
Sbjct: 8   LLFPLVSTKRYCTTWHTIKSGDTCWKIASEASISVQ 43


>AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical
           protein Y73F8A.21 protein.
          Length = 703

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMD 257
           G+C  SV+Q+ + R  RFN C+   M+
Sbjct: 83  GECTVSVLQKTQCRSCRFNKCLREGMN 109


>U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform d protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>U46670-2|AAC48174.4|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform c protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>U46670-1|AAP46277.1|  445|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>AY204166-1|AAO39170.1|  436|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 104 GNCDVNKNIRCACRHCRFNKCLLVGMDA 131


>AY204165-1|AAO39169.1|  445|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>AY204164-1|AAO39168.1|  440|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>AY204163-1|AAO39167.1|  440|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 337 GQCPESVVQRLRVRHLRFNVCVLRAMDA 254
           G C  +   R   RH RFN C+L  MDA
Sbjct: 113 GNCDVNKNIRCACRHCRFNKCLLVGMDA 140


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 374 LIIHHRHCYCWHGAMSRE-RCSTLASSASSVQCLCV 270
           L  H+ H YCW     RE R S  +S+ S+ + LC+
Sbjct: 876 LASHYCHMYCWISFYWRETRRSARSSAYSNFRDLCI 911


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 162 NSDDSSSLERQ*KRGYSEQTPQQPLRSYREQASIARNTQT 281
           +SD  +S  R+ +R  S+ +P +P R  RE++  ARN ++
Sbjct: 141 DSDKDNSPPRR-RRHDSDNSPPRPSRKIREESPSARNRRS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,735
Number of Sequences: 27780
Number of extensions: 257786
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)