Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0898
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.50 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.50 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.87 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.87 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +1

Query: 130 DNGERSPTLSETATTARASSVNENGGTLNKLHNSHYDPIANKRP*RATH 276
           D+G+ +P  +E          +  GGTL    N   D  A   P    H
Sbjct: 340 DHGDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIH 388


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +1

Query: 130 DNGERSPTLSETATTARASSVNENGGTLNKLHNSHYDPIANKRP*RATH 276
           D+G+ +P  +E          +  GGTL    N   D  A   P    H
Sbjct: 340 DHGDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIH 388


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 451 YIVVRHYGLSFLLVIIPVDLP 389
           YI++  + L +LLV + +DLP
Sbjct: 115 YIIILAWALFYLLVSLRIDLP 135


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 451 YIVVRHYGLSFLLVIIPVDLP 389
           YI++  + L +LLV + +DLP
Sbjct: 168 YIIILAWALFYLLVSLRIDLP 188


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 185 EARAVVAVSDNVGLLSPLSLDKY*TFVYIERVICLD 78
           +++ +V   DN+ +   +SL+K  ++V    V C D
Sbjct: 401 DSQLLVISDDNIHIKGVISLNKLTSYVISGIVKCTD 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,444
Number of Sequences: 438
Number of extensions: 3358
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)