Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0898
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07420.1 68418.m00849 pectinesterase family protein contains ...    30   1.1  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    28   3.5  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   8.1  
At1g03280.1 68414.m00306 transcription initiation factor IIE (TF...    27   8.1  

>At5g07420.1 68418.m00849 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 85  QITRSIYTNVQYLSKDNGERSPTLSETATTARASSVNENGGTLNKLHNSHYD--PIANK 255
           QI +    NV+  S+  G   P L     + R   VN+NGG   K  N+     P+ANK
Sbjct: 34  QIPQWFMANVKPFSQRRGTLDPELEAAEASRRVIIVNQNGGGDFKTINAAIKSIPLANK 92


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 2   DDPAPRYETQVLNMAVDDADLQLDFSPNKSRVQYTQTFNIYPKIMVREVQRYRKQRRQLE 181
           DDP  + E +V N   DD  LQL+        +  +    + K + RE+++    RR+ E
Sbjct: 302 DDPFVKSEREVGNEDEDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKRE 361


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 278 DIEPKMPNSQALNNALGTLP 337
           +I P  PN Q  NNA GTLP
Sbjct: 154 NIGPPPPNRQRRNNASGTLP 173


>At1g03280.1 68414.m00306 transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein contains Pfam
           profile: PF02002 TFIIE alpha subunit
          Length = 479

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 141 EKSNVIGNSDDSSSLERQ*KRGYSEQTPQQPLRSYREQASIA 266
           +K + IGN D+    +   K  Y+E   QQ L + R Q   A
Sbjct: 362 DKKSAIGNGDEKDLKDEYLKAYYAELMKQQELAARRNQQESA 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,058,163
Number of Sequences: 28952
Number of extensions: 238057
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)