Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0897
         (514 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILR9 Cluster: Putative uncharacterized protein; n=1; ...    34   1.7  
UniRef50_Q54DM3 Cluster: ATP-dependent DNA helicase RecQ family ...    33   2.9  
UniRef50_A6LG83 Cluster: Putative transcriptional regulator; n=3...    32   6.7  
UniRef50_Q24HP0 Cluster: ATPase, histidine kinase-, DNA gyrase B...    32   6.7  

>UniRef50_Q8ILR9 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 4662

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 244  HITDHCYRPQEVTIRV*FKHNNTVYSNRNNLNVRHL*KNIYQIINKHTQS 95
            HI ++      +   +   +NN   +N NNLNV HL  NI QI N +  S
Sbjct: 2880 HINNNVNNNNNIVNHLNNNNNNNNANNINNLNVNHLNNNISQINNNYNNS 2929


>UniRef50_Q54DM3 Cluster: ATP-dependent DNA helicase RecQ family
           protein; n=1; Dictyostelium discoideum AX4|Rep:
           ATP-dependent DNA helicase RecQ family protein -
           Dictyostelium discoideum AX4
          Length = 1259

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 187 HNNTVYSNRNNLNVRHL*KNIYQIINKHTQSL 92
           +NN  Y+N NN N   +  NIY  +NK++  L
Sbjct: 216 NNNNNYNNNNNNNTNSINSNIYNFVNKNSSDL 247


>UniRef50_A6LG83 Cluster: Putative transcriptional regulator; n=3;
           Parabacteroides|Rep: Putative transcriptional regulator
           - Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC11152)
          Length = 381

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  DCVCLFIIWYIFFYKCLTFKLLRFEYT 176
           D   L ++WY FFYK L  K++  ++T
Sbjct: 215 DKTFLLVLWYYFFYKALFLKVIHLDHT 241


>UniRef50_Q24HP0 Cluster: ATPase, histidine kinase-, DNA gyrase B-,
           and HSP90-like domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1414

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 190 KHNNTVYSNRNNLNVRHL*KNIYQIINKHTQSLFDA 83
           KH N +Y N  NL V  L +N++ +  +  +S F A
Sbjct: 629 KHENAIYGNDQNLKVSQLLQNLFLVGKQQEESAFSA 664


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,656,935
Number of Sequences: 1657284
Number of extensions: 6405108
Number of successful extensions: 11829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11802
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)