Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0896
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    38   0.001
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   3.0  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   5.3  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   7.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.3  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.3  

>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 PSEGSSGHLLLWHDKAYSVGGLGCIARVLSDR 356
           P   +S  LL WH+K   + G+GCI RVL+ R
Sbjct: 118 PQAYNSSVLLNWHEKVVEISGIGCIVRVLNSR 149



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 41  SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDI 220
           S +  G  +  LK +L+  P G+  Q+V+   L   + VL  I++A I   V   S ++I
Sbjct: 45  SAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEI 104

Query: 221 DN 226
           DN
Sbjct: 105 DN 106


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 414 DKGLIDWLSRVVFIIITLSFCLKELLLY 331
           D G+I W +R +  +I   FCL  +L Y
Sbjct: 285 DAGIILWANRHLAYVIVAGFCLYFILSY 312


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 376 YNNYTLILSERTLAIQPRPPTLYALSCHNNRWP 278
           ++NY +  S   L + P  PTL   S     WP
Sbjct: 133 FDNYEIYASLMALGVYPYVPTLTGFSTFLGVWP 165


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 113 NQQVKENALTLTLKVLLAIKSAQIEEAVGSLSL--DDIDNPYXV 238
           N QV  NAL     V  A +S +  EA+GS +     I+N Y V
Sbjct: 91  NSQVLGNALGAKESVSQATESFEEPEAIGSFTFSGQKIENKYTV 134


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 38  CSLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSL 211
           CS+  +   I  ++ +L N+P  + N Q K++  T     L AI+S   E +  SLSL
Sbjct: 322 CSIYGREHEIKLIRKILRNSP-RAINHQDKKDLETFNPYYLNAIES---ESSSQSLSL 375


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 328 PRPPTLYALSCHNNRWPLEPSDGNSN 251
           P+  TL  L+  N+ WPL+P    +N
Sbjct: 235 PKDITLPKLNVKNSAWPLQPYSPPAN 260


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 372 IITLSFCLKELLLYNQDHLHCMLYHAITTDGHLNPLMEIQTFID 241
           +I L FC +  +L   +  H  ++H I+ +  LN   E    +D
Sbjct: 220 MIALFFCSRNEVLSGTNDSHDSIHHIISNNAQLNIPQEYIDVLD 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,988
Number of Sequences: 5004
Number of extensions: 39989
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)