Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0896
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0481 - 9772783-9773985                                           29   3.1  
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934...    28   5.4  
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693...    27   7.1  
10_07_0077 + 12645091-12646750,12647612-12648273                       27   9.4  
09_02_0477 - 9737851-9739356                                           27   9.4  
04_04_0207 + 23602065-23604315,23604611-23605116                       27   9.4  

>09_02_0481 - 9772783-9773985
          Length = 400

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 114 LDDPSGALFNTSLSASICLP*FNNEHTSPSSGPVGPAC 1
           +++  G + NT          F NEH  P + P+GP C
Sbjct: 131 IEESHGLIINTFHGLEAPYIKFWNEHVGPRAWPIGPLC 168


>02_05_0685 + 30891289-30891810,30892740-30892915,30893379-30893492,
            30893846-30893954,30894038-30894124,30895137-30895736,
            30895823-30896101,30896808-30896897,30897151-30897507,
            30897924-30898160,30898733-30898953,30899856-30899955,
            30900042-30900188,30900287-30900385
          Length = 1045

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +2

Query: 2    QAGPTGPDEG-EVCSLLNQGRHIDALKLVLNNAPLGSSNQQVK-ENALTLTL----KVLL 163
            Q  PTG  E  ++  ++ + R +D    V+   PLG +   ++ EN L L +    KVLL
Sbjct: 846  QIEPTGWKEFLQISKVIQEARALDINTQVIY--PLGETAAAIRGENELWLAMVLRNKVLL 903

Query: 164  AIKSAQIEEAVGSLSLDDI 220
             +K +Q+    GSL  + I
Sbjct: 904  DLKPSQLAAICGSLVSEGI 922


>01_06_0393 +
           28968873-28968918,28969048-28969084,28969165-28969384,
           28969557-28969715,28969831-28969950,28972154-28972240,
           28972329-28972418,28972516-28972602,28972761-28972877,
           28972945-28973028,28973585-28975324,28975670-28975816,
           28975998-28976431,28976523-28976667
          Length = 1170

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 273 SSGHLLLWHDKAYSVGGLGC 332
           +SG L  W D +Y+VG LGC
Sbjct: 541 TSGDLFNWGDGSYNVGLLGC 560


>10_07_0077 + 12645091-12646750,12647612-12648273
          Length = 773

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 476 LNHESFCKQIKKLNQHSLKFRIKVSLIG*AV 384
           LN+ SF    KK ++H ++FR +V+ +G A+
Sbjct: 671 LNYPSFSVVFKKKSKHVMRFRREVTNVGPAM 701


>09_02_0477 - 9737851-9739356
          Length = 501

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 51  FNNEHTSPSSGPVGPAC 1
           F NEH  P + P+GP C
Sbjct: 265 FWNEHVGPRAWPIGPLC 281


>04_04_0207 + 23602065-23604315,23604611-23605116
          Length = 918

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 192 ASSICADLIASNTFKVRVNAFSFTC*LDDPSGALFNTSLSASIC 61
           A+S  A  +A+   + +    SF   L+DPSGAL   S S   C
Sbjct: 25  AASAAAPAVAAMPVQPQELLLSFRSSLNDPSGALSTWSRSTPYC 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,677
Number of Sequences: 37544
Number of extensions: 225144
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)