Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0896
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 comple...    54   8e-08
U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical pr...    47   7e-06
Z73911-2|CAC42338.2|  402|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    28   3.6  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    28   3.6  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 complex
           component protein 7 protein.
          Length = 152

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 29/69 (42%), Positives = 40/69 (57%)
 Frame = +2

Query: 17  GPDEGEVCSLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAV 196
           GPDE  V   L+  R  DAL   L + PL + +Q VK+ A  L  KVL + K+A+IE  V
Sbjct: 36  GPDERAVQGFLSSNRLEDALHAALLSPPLKTKDQNVKDRATQLVTKVLQSFKNAEIEATV 95

Query: 197 GSLSLDDID 223
             LS+++ D
Sbjct: 96  QKLSIEESD 104


>U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical
           protein C46H11.3 protein.
          Length = 146

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +2

Query: 2   QAGPTGPDEGEVCSLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQ 181
           ++   GP+  EV   L   R   AL+ VL N P G S Q++K  A+ L  +V+ A +   
Sbjct: 25  ESADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQELKNRAVLLVAEVIHAFRQTD 84

Query: 182 IEEAVGSLSLDDID 223
           IEE+V  LS ++ D
Sbjct: 85  IEESVHKLSNENGD 98



 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 285 LLLWHDKAYSVGGLGCIARVLSDRMRV 365
           LLLWH +  S  G G I RVLS+R R+
Sbjct: 120 LLLWHSQLVSKFGQGSIVRVLSNRQRL 146


>Z73911-2|CAC42338.2|  402|Caenorhabditis elegans Hypothetical
           protein T12A7.6 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 210 KDKLPTASSICADLIASNTFKVRV 139
           KDK+PT S IC+  I ++ F+ R+
Sbjct: 28  KDKVPTLSEICSSSITTSLFQNRI 51


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 41  SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSL 205
           +++ +GR++D   + +    +   N    +N LT  +K+L  + S + E  VG L
Sbjct: 21  AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLL 75


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 41  SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSL 205
           +++ +GR++D   + +    +   N    +N LT  +K+L  + S + E  VG L
Sbjct: 21  AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLL 75


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 364 CNYYKYYTAQPINETFILNFKECWFNFFICLQNDSWFSASKFYLL 498
           CN  K  TAQ  +E  +L+ K+C  N    L++DS+    K  +L
Sbjct: 236 CNSTKLETAQATHENIVLDPKKCTQN---TLRSDSYQDTEKKIIL 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,830
Number of Sequences: 27780
Number of extensions: 222776
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)