Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0893
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   106   3e-24
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    58   1e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    46   3e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    36   0.006
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    35   0.008
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    31   0.17 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.30 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.70 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.7  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.5  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  106 bits (254), Expect = 3e-24
 Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 AAVSKTAXAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 431
           AAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN AN
Sbjct: 38  AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97

Query: 432 VIRYFPTQALNFAFKDKYKQVF 497
           V+RYFPTQALNFAFKDK+K++F
Sbjct: 98  VLRYFPTQALNFAFKDKFKKMF 119



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 324 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 503
           S +   ++++ G+VD + +  +  GL   +RG   +V+     + L F   D  K V L 
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225

Query: 504 G 506
           G
Sbjct: 226 G 226


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)
 Frame = +3

Query: 255 AAVSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           A VS+TA +P+ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  N 
Sbjct: 31  ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83

Query: 435 IRYFPTQALNFAFKDKYKQ 491
           +R FP  A+ FA  +  KQ
Sbjct: 84  LRAFPYGAVQFATFNMLKQ 102



 Score = 31.9 bits (69), Expect = 0.075
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 249 YLAAVSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 428
           +   + +T   P + ++   QV  +         YK I  A   I K +G+  F+RG  +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291

Query: 429 NVIRYFPTQALNF 467
           N+++  P  ++ +
Sbjct: 292 NMLKIIPVMSITW 304


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
 Frame = +3

Query: 261 VSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
           V+K+  AP++RVK+L Q  H S +  A  R+ G+  A   I    GL   ++G+ A + R
Sbjct: 30  VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88

Query: 441 YFPTQALNFAFKDKYKQVFLGG---VTRRRSSGVTSLVIWAPVVPPEPLSVLRVPLDF 605
            FP   + F   ++ ++V +      T  R     SL     V    PL ++RV L +
Sbjct: 89  VFPYAGIKFVAYEQVRRVLIRDPEHETHARRFLSGSLAGTCSVFFTYPLELIRVRLAY 146


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 351 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVTRRRSSG 530
           Y G  D   +I K +G    +RG    ++   P +AL FA  D Y +++     R+ SS 
Sbjct: 45  YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSP 104

Query: 531 VTSLV 545
             S++
Sbjct: 105 ALSIL 109



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 282 PIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 458
           P E +K+ LQ V++ SK       Y G VD F +I K++ +L+ + G  A + R+    A
Sbjct: 124 PFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNA 176

Query: 459 LNFAFKDKYK 488
             F    K +
Sbjct: 177 GYFGVIQKIR 186


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +3

Query: 270 TAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
           T   P+  ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407

Query: 450 TQALNFAFKDKYKQ 491
           + A+++   +  K+
Sbjct: 408 SVAISYLVYENCKK 421



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 258 AVSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANV 434
           +V++    P++ +K  +Q   +S+     Q  K I+ +  + + K  G+  ++RG    +
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGI 295

Query: 435 IRYFPTQALNFAFKDKYKQVFLGGVTRR 518
           +  FP  A +    +  K+ ++G +  R
Sbjct: 296 LGMFPYSATDLGTFEGLKRTWIGILASR 323


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +3

Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 461
           PI+ VK  +Q       ++A + YK  +    +I  + GLL FW G    + R   +  +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276

Query: 462 NFAFKDKYKQV 494
            F   +K  ++
Sbjct: 277 VFTVYEKVMEI 287


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 324 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 467
           S  I    +Y G++  F  +  EQG++  + G  A+++R  P   + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 336 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +3

Query: 264 SKTAXAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 434
           S    AP++ VK   Q Q         +      G + +   I   +G+   +RG    +
Sbjct: 19  SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78

Query: 435 IRYFPTQALNFAFKDKYKQVFLGGVTRRRSS 527
           + Y P+ ++ F   +K K +F  GV ++ +S
Sbjct: 79  LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 72  YEITPNLLFKNQELVFRDPPSACAATPTSTY 164
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 360 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 452
           +++    + + +GL  F+RG +  V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,653
Number of Sequences: 5004
Number of extensions: 44495
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)