Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0893
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 2e-41
 Identities = 72/87 (82%), Positives = 80/87 (91%)
 Frame = +3

Query: 255 AAVSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           AA+SKT  APIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 435 IRYFPTQALNFAFKDKYKQVFLGGVTR 515
           IRYFPTQALNFAFKDKYKQVFLGGV +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 196 MSNLADPVAFAKDFLAGGI 252
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 509 DKKTQFWRYF 538
           DK TQF RYF
Sbjct: 106 DKNTQFLRYF 115



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 342 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 479
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 2e-41
 Identities = 72/87 (82%), Positives = 80/87 (91%)
 Frame = +3

Query: 255 AAVSKTAXAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           AA+SKT  APIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 435 IRYFPTQALNFAFKDKYKQVFLGGVTR 515
           IRYFPTQALNFAFKDKYKQVFLGGV +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 196 MSNLADPVAFAKDFLAGGI 252
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 509 DKKTQFWRYF 538
           DK TQF RYF
Sbjct: 106 DKNTQFLRYF 115



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 342 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 479
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 396 PAPWGCARRRRR 361
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 121 VIPHPRVPQLPPRHIHLVKIT 183
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,680
Number of Sequences: 438
Number of extensions: 3297
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)