Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0892
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 41  IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 181
           I+C + S     + +  F  +GF       P+    ++ P   FL Y
Sbjct: 317 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 102 MNMKVRSRVARSGRLFKTQMMQLL 31
           ++MK++  V +SGR+  TQ  + L
Sbjct: 353 VSMKIKQNVPQSGRVNNTQRNEYL 376


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/47 (23%), Positives = 18/47 (38%)
 Frame = +2

Query: 41  IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 181
           I+C + S     + +  F  +GF       P+     + P   FL Y
Sbjct: 370 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,700
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)