Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0892
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52270.1 68418.m06487 vesicle transport protein-related simil...    29   3.1  
At5g40470.1 68418.m04908 expressed protein                             27   9.5  

>At5g52270.1 68418.m06487 vesicle transport protein-related similar
           to vesicle trafficking protein sec22b [Mus musculus]
           GI:1907386
          Length = 214

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +2

Query: 161 NYIFLHYNMQ*NFIHKQ---SFFSGEKLT---KKNNFPFFPQK*SCFFRMATLDYPRLVQ 322
           N  FL Y  Q  F+ KQ         K+T     ++F F  +K  C+  ++   YPR + 
Sbjct: 28  NTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLDHHSFHFLVEKKICYIALSDSSYPRKLL 87

Query: 323 VKHLEILSKSVFKM 364
             +L+ L+K + K+
Sbjct: 88  FNYLQNLNKELDKL 101


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 82  QGSAVGTTLQNADDATLTAETLFSE 8
           +G  +GTT   +D+  L AET+FS+
Sbjct: 87  RGVTIGTTPSRSDEEHLKAETIFSD 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,298
Number of Sequences: 28952
Number of extensions: 230077
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)