Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0891
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.2  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNITRHQSL 167
           NG     + P  Q T  TRHQ L
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQIL 246


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNITRHQSL 167
           NG     + P  Q T  TRHQ L
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQIL 246


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNITRHQSL 167
           NG     + P  Q T  TRHQ L
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQIL 246


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -3

Query: 561 PGFVGPRVQ-ELQKC 520
           PGFVGPR + ++ +C
Sbjct: 288 PGFVGPRCEGDINEC 302


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 589  HKGLEARTAAGVCGSTRSGT--SEMFSKIKGGQLFPLTS 479
            H G   R +A    S RSGT  S    +  GG L  L+S
Sbjct: 926  HAGSPCRNSASPASSDRSGTPRSTNGDRKPGGSLGALSS 964


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 SWAAAIDLPLTMSAVCCSKLRISSMMIVICLKTFR 334
           S ++A++ P   S   C     SSM+ + CL T R
Sbjct: 223 SSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 257


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 SWAAAIDLPLTMSAVCCSKLRISSMMIVICLKTFR 334
           S ++A++ P   S   C     SSM+ + CL T R
Sbjct: 12  SSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 46


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 SWAAAIDLPLTMSAVCCSKLRISSMMIVICLKTFR 334
           S ++A++ P   S   C     SSM+ + CL T R
Sbjct: 12  SSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,867
Number of Sequences: 336
Number of extensions: 3023
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)