Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0891
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    29   0.46 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.60 
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   1.8  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    27   3.2  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   4.2  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   7.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.8  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 226 GVMGCGHRFATNDECRLLLEVEDFFN 303
           G  G    F TND+ R++ E+E F+N
Sbjct: 353 GRKGVSINFVTNDDVRMMREIEQFYN 378


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 223 EGVMGCGHRFATNDECRLLLEVEDFFNDDC 312
           E  + C   F  NDECR L +   FF+ +C
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHREC 552


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 374 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 463
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 214 CESEGVMGCGHRFATNDECRLLLEVEDFFNDDCD 315
           CESE   GCG R   N   R L  +  F + DCD
Sbjct: 96  CESEQNNGCGRR---NQLARRLAFLGSFGDGDCD 126


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +1

Query: 4   FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 177
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 178 FAFVELNHYNNECESEGVMGCGHRF 252
           F F E NH +++     ++  G ++
Sbjct: 367 FQFQEQNHIHHKKIRRKLLAAGWKW 391


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 115 DKLVHLHKTPTSLDINPSGLLFAFVELNH 201
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 91  LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESE 225
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 427 DLLQQLDSQCKQENIFSNWLEEKVDLP*SSKTFLKFLNA 543
           ++L++++ QCKQ  I S  +EE V L  +SK F   LNA
Sbjct: 331 EILEKVE-QCKQFYISSREMEENVPLS-ASKEFNYKLNA 367


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 154 DINPSGLLFAFVELNHYNNECESEGVMGCGHRFATNDECRLLLEVEDFFNDDC 312
           D+  SG LFA+ +    ++   ++  + C   +   D CR L   + FF+  C
Sbjct: 744 DVKRSGGLFAYFDDASLSS---ADSCLICLETYTNGDICRKLQACKHFFHQAC 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,422
Number of Sequences: 5004
Number of extensions: 47092
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)