Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0891
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       31   0.82 
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310...    28   5.8  
04_04_0317 + 24341389-24341504,24341532-24341973                       28   7.7  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 426 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 331
           V+E G  + QL+R WR + RG++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>02_04_0267 -
           21430370-21430474,21430559-21430618,21430937-21431046,
           21431220-21431295,21431541-21431594,21431935-21432006,
           21432088-21432173,21432694-21432750,21432886-21432991
          Length = 241

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 76  HNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG-VMGCGHRF 252
           HN+ +L  +         +  T   +D   + LL     L  + N   +E  V GC  ++
Sbjct: 120 HNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNGVAAENLVKGCAGKY 179

Query: 253 ATNDECRL 276
           AT DE RL
Sbjct: 180 ATGDEVRL 187


>04_04_0317 + 24341389-24341504,24341532-24341973
          Length = 185

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 238 CGHRFATNDECRLLLEVEDFFNDDCDLLK 324
           C HR    D+ R L    D F++DCD+ K
Sbjct: 150 CQHRMVARDDVRTLSGGHD-FHEDCDIAK 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,064
Number of Sequences: 37544
Number of extensions: 311985
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)