Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0891
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    28   6.8  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   6.8  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 KTPTSLDINPSGLLFAFVELNHYNNEC 216
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical
           protein F27D9.4 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 594 EXTKDLKLEPLPGFVGPRVQELQKCFRRSREVNF 493
           E T D  LEPLP  +  R   L  C +   + NF
Sbjct: 104 ENTTDHSLEPLPSIIQERKYALSTCSKFHSKTNF 137


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 293 ISSMMIVICLK-TFRALQRRSKSITPRVSTRHHRRS*NQ 406
           +SS++ VIC    F  ++   KSITP ++  H +R   Q
Sbjct: 186 LSSIVPVICYSWIFYTIRSAHKSITPNMAPEHQKRQGRQ 224


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 424 NDLLQQLDSQCKQENIFSNWLEEKVDLP 507
           N  +Q++D+ C  +NI    +  K+D+P
Sbjct: 103 NHWMQEVDTYCTNDNIIKMMVANKIDMP 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,652
Number of Sequences: 27780
Number of extensions: 277037
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)