Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0891
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   4.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   4.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   4.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 66  CLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLW---TFIRIRGTKSLQQ 209
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 548 VHAFRNFRNVFE---DQGRSTFSSNQLEKI 468
           +H+ R   N F+   D+GR T   N+L+++
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 548 VHAFRNFRNVFE---DQGRSTFSSNQLEKI 468
           +H+ R   N F+   D+GR T   N+L+++
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 548 VHAFRNFRNVFE---DQGRSTFSSNQLEKI 468
           +H+ R   N F+   D+GR T   N+L+++
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 45  NRLHTSVCLHAQYKNACQNGALTGQVSPS 131
           N L  ++ +  Q       GA TG++SP+
Sbjct: 52  NILPNNISIAGQNTYKVAKGAFTGEISPA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,165
Number of Sequences: 438
Number of extensions: 3137
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)